Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03275 and BPHYT_RS03280 are separated by 71 nucleotides BPHYT_RS03280 and BPHYT_RS03285 are separated by 3 nucleotides
BPHYT_RS03275: BPHYT_RS03275 - metal ABC transporter permease, at 736,144 to 738,033
_RS03275
BPHYT_RS03280: BPHYT_RS03280 - mannose-1-phosphate guanylyltransferase, at 738,105 to 738,833
_RS03280
BPHYT_RS03285: BPHYT_RS03285 - aminoglycoside phosphotransferase, at 738,837 to 739,928
_RS03285
Position (kb) 738
739 Strain fitness (log2 ratio) -2
-1
0
1 at 737.105 kb on - strand, within BPHYT_RS03275 at 737.105 kb on - strand, within BPHYT_RS03275 at 737.106 kb on + strand, within BPHYT_RS03275 at 737.135 kb on - strand, within BPHYT_RS03275 at 737.437 kb on - strand, within BPHYT_RS03275 at 737.605 kb on - strand, within BPHYT_RS03275 at 737.639 kb on - strand at 738.107 kb on - strand at 738.107 kb on - strand at 738.191 kb on - strand, within BPHYT_RS03280 at 738.481 kb on + strand, within BPHYT_RS03280 at 738.847 kb on + strand at 738.913 kb on + strand at 738.914 kb on - strand at 738.967 kb on + strand, within BPHYT_RS03285 at 738.967 kb on + strand, within BPHYT_RS03285 at 738.968 kb on - strand, within BPHYT_RS03285 at 738.968 kb on - strand, within BPHYT_RS03285 at 739.114 kb on + strand, within BPHYT_RS03285 at 739.117 kb on + strand, within BPHYT_RS03285 at 739.190 kb on - strand, within BPHYT_RS03285 at 739.190 kb on - strand, within BPHYT_RS03285 at 739.204 kb on + strand, within BPHYT_RS03285 at 739.205 kb on - strand, within BPHYT_RS03285
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 737,105 - BPHYT_RS03275 0.51 +0.8 737,105 - BPHYT_RS03275 0.51 -1.9 737,106 + BPHYT_RS03275 0.51 +0.4 737,135 - BPHYT_RS03275 0.52 +0.1 737,437 - BPHYT_RS03275 0.68 -0.9 737,605 - BPHYT_RS03275 0.77 +0.0 737,639 - +0.7 738,107 - -0.4 738,107 - +1.2 738,191 - BPHYT_RS03280 0.12 -1.3 738,481 + BPHYT_RS03280 0.52 -1.1 738,847 + +0.2 738,913 + -0.7 738,914 - +0.2 738,967 + BPHYT_RS03285 0.12 -0.3 738,967 + BPHYT_RS03285 0.12 +0.7 738,968 - BPHYT_RS03285 0.12 +1.2 738,968 - BPHYT_RS03285 0.12 -0.6 739,114 + BPHYT_RS03285 0.25 +1.0 739,117 + BPHYT_RS03285 0.26 -1.3 739,190 - BPHYT_RS03285 0.32 -0.6 739,190 - BPHYT_RS03285 0.32 +0.7 739,204 + BPHYT_RS03285 0.34 -0.3 739,205 - BPHYT_RS03285 0.34 +0.7
Or see this region's nucleotide sequence