Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03050 and BPHYT_RS03055 are separated by 488 nucleotides BPHYT_RS03055 and BPHYT_RS03060 are separated by 95 nucleotides
BPHYT_RS03050: BPHYT_RS03050 - cytochrome C, at 680,008 to 680,721
_RS03050
BPHYT_RS03055: BPHYT_RS03055 - LysR family transcriptional regulator, at 681,210 to 682,097
_RS03055
BPHYT_RS03060: BPHYT_RS03060 - MFS transporter, at 682,193 to 683,512
_RS03060
Position (kb) 681
682
683 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 680.216 kb on + strand, within BPHYT_RS03050 at 680.216 kb on + strand, within BPHYT_RS03050 at 680.432 kb on + strand, within BPHYT_RS03050 at 680.459 kb on + strand, within BPHYT_RS03050 at 680.460 kb on - strand, within BPHYT_RS03050 at 680.475 kb on - strand, within BPHYT_RS03050 at 680.519 kb on + strand, within BPHYT_RS03050 at 680.519 kb on + strand, within BPHYT_RS03050 at 680.552 kb on + strand, within BPHYT_RS03050 at 680.552 kb on + strand, within BPHYT_RS03050 at 680.553 kb on - strand, within BPHYT_RS03050 at 680.671 kb on + strand at 680.671 kb on + strand at 680.678 kb on + strand at 680.679 kb on - strand at 680.706 kb on + strand at 680.706 kb on + strand at 680.747 kb on + strand at 680.748 kb on - strand at 680.760 kb on - strand at 680.810 kb on + strand at 680.810 kb on + strand at 680.810 kb on + strand at 680.839 kb on + strand at 680.841 kb on + strand at 680.842 kb on - strand at 680.921 kb on + strand at 680.921 kb on + strand at 680.922 kb on - strand at 680.923 kb on + strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.008 kb on - strand at 681.040 kb on + strand at 681.080 kb on + strand at 681.080 kb on + strand at 681.081 kb on - strand at 681.375 kb on + strand, within BPHYT_RS03055 at 681.375 kb on + strand, within BPHYT_RS03055 at 681.376 kb on - strand, within BPHYT_RS03055 at 681.443 kb on - strand, within BPHYT_RS03055 at 681.443 kb on - strand, within BPHYT_RS03055 at 681.521 kb on - strand, within BPHYT_RS03055 at 681.787 kb on + strand, within BPHYT_RS03055 at 681.790 kb on + strand, within BPHYT_RS03055 at 681.790 kb on + strand, within BPHYT_RS03055 at 681.790 kb on + strand, within BPHYT_RS03055 at 681.791 kb on - strand, within BPHYT_RS03055 at 681.791 kb on - strand, within BPHYT_RS03055 at 682.751 kb on + strand, within BPHYT_RS03060 at 682.751 kb on + strand at 682.752 kb on - strand, within BPHYT_RS03060 at 682.753 kb on + strand, within BPHYT_RS03060 at 682.753 kb on + strand, within BPHYT_RS03060 at 682.753 kb on + strand, within BPHYT_RS03060 at 683.025 kb on + strand, within BPHYT_RS03060 at 683.026 kb on - strand, within BPHYT_RS03060
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 680,216 + BPHYT_RS03050 0.29 -0.3 680,216 + BPHYT_RS03050 0.29 +0.1 680,432 + BPHYT_RS03050 0.59 +0.3 680,459 + BPHYT_RS03050 0.63 +0.7 680,460 - BPHYT_RS03050 0.63 -2.1 680,475 - BPHYT_RS03050 0.65 +2.8 680,519 + BPHYT_RS03050 0.72 +0.1 680,519 + BPHYT_RS03050 0.72 -0.5 680,552 + BPHYT_RS03050 0.76 +1.3 680,552 + BPHYT_RS03050 0.76 +0.9 680,553 - BPHYT_RS03050 0.76 +1.7 680,671 + -0.4 680,671 + +0.7 680,678 + +0.3 680,679 - +0.8 680,706 + -0.5 680,706 + +0.8 680,747 + +1.2 680,748 - +0.3 680,760 - +0.1 680,810 + +0.6 680,810 + -1.6 680,810 + -0.0 680,839 + -0.9 680,841 + -2.2 680,842 - +0.1 680,921 + +0.4 680,921 + +0.1 680,922 - -0.3 680,923 + +0.9 681,007 + +0.3 681,007 + +0.3 681,008 - -0.3 681,040 + -0.4 681,080 + -0.5 681,080 + +0.7 681,081 - +0.1 681,375 + BPHYT_RS03055 0.19 -1.3 681,375 + BPHYT_RS03055 0.19 -0.2 681,376 - BPHYT_RS03055 0.19 -0.1 681,443 - BPHYT_RS03055 0.26 -0.9 681,443 - BPHYT_RS03055 0.26 +0.2 681,521 - BPHYT_RS03055 0.35 +0.6 681,787 + BPHYT_RS03055 0.65 +0.4 681,790 + BPHYT_RS03055 0.65 -0.3 681,790 + BPHYT_RS03055 0.65 -0.2 681,790 + BPHYT_RS03055 0.65 +0.8 681,791 - BPHYT_RS03055 0.65 +0.2 681,791 - BPHYT_RS03055 0.65 -1.8 682,751 + BPHYT_RS03060 0.42 +1.1 682,751 + +0.7 682,752 - BPHYT_RS03060 0.42 -0.1 682,753 + BPHYT_RS03060 0.42 -0.9 682,753 + BPHYT_RS03060 0.42 +0.0 682,753 + BPHYT_RS03060 0.42 -1.1 683,025 + BPHYT_RS03060 0.63 -0.4 683,026 - BPHYT_RS03060 0.63 -0.8
Or see this region's nucleotide sequence