Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02005 and BPHYT_RS02010 are separated by 44 nucleotides BPHYT_RS02010 and BPHYT_RS02015 are separated by 95 nucleotides
BPHYT_RS02005: BPHYT_RS02005 - diguanylate phosphodiesterase, at 454,840 to 456,108
_RS02005
BPHYT_RS02010: BPHYT_RS02010 - copper homeostasis protein CutC, at 456,153 to 456,848
_RS02010
BPHYT_RS02015: BPHYT_RS02015 - phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) <small>(from data)</small>, at 456,944 to 460,531
_RS02015
Position (kb) 456
457 Strain fitness (log2 ratio) -2
-1
0
1 at 455.201 kb on - strand, within BPHYT_RS02005 at 455.950 kb on + strand, within BPHYT_RS02005 at 456.153 kb on - strand at 456.355 kb on - strand, within BPHYT_RS02010 at 456.355 kb on - strand, within BPHYT_RS02010 at 456.370 kb on - strand, within BPHYT_RS02010 at 456.854 kb on + strand at 456.859 kb on - strand at 456.859 kb on - strand at 456.859 kb on - strand at 457.454 kb on + strand, within BPHYT_RS02015 at 457.466 kb on - strand, within BPHYT_RS02015 at 457.614 kb on + strand, within BPHYT_RS02015 at 457.614 kb on + strand, within BPHYT_RS02015 at 457.614 kb on + strand, within BPHYT_RS02015 at 457.615 kb on - strand, within BPHYT_RS02015 at 457.615 kb on - strand, within BPHYT_RS02015 at 457.629 kb on + strand, within BPHYT_RS02015 at 457.629 kb on + strand, within BPHYT_RS02015 at 457.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 455,201 - BPHYT_RS02005 0.28 -0.3 455,950 + BPHYT_RS02005 0.87 +1.3 456,153 - -0.5 456,355 - BPHYT_RS02010 0.29 +0.6 456,355 - BPHYT_RS02010 0.29 -2.5 456,370 - BPHYT_RS02010 0.31 +1.0 456,854 + -1.5 456,859 - +0.2 456,859 - -0.6 456,859 - -0.7 457,454 + BPHYT_RS02015 0.14 -0.4 457,466 - BPHYT_RS02015 0.15 +0.1 457,614 + BPHYT_RS02015 0.19 -0.2 457,614 + BPHYT_RS02015 0.19 +0.4 457,614 + BPHYT_RS02015 0.19 +0.0 457,615 - BPHYT_RS02015 0.19 -0.3 457,615 - BPHYT_RS02015 0.19 +0.4 457,629 + BPHYT_RS02015 0.19 -0.2 457,629 + BPHYT_RS02015 0.19 -0.2 457,630 - +0.8
Or see this region's nucleotide sequence