Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00335

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
83,283	+				-0.1
83,283	+				+0.3
83,283	+				+1.3
83,283	+				+0.6
83,386	+				-0.2
83,386	+				-2.0
83,427	+				-2.2
83,427	+				-0.9
83,428	-				-0.4
83,428	-				-0.7
83,428	-				+0.7
83,428	-				+0.4
83,431	+				-1.2
83,432	-				+0.8
83,532	+				+0.5
83,532	+				+0.0
83,532	+				-0.6
83,532	+				-0.5
83,532	+				+0.0
83,533	-				+0.0
83,533	-				+0.3
83,533	-				+0.6
83,533	-				+0.8
83,533	-				+0.1
83,533	-				-0.4
83,533	-				-0.2
84,232	+		BPHYT_RS00335	0.13	-0.1
84,233	-		BPHYT_RS00335	0.13	+1.3
84,237	-		BPHYT_RS00335	0.14	+0.1
84,361	+		BPHYT_RS00335	0.26	-1.0
84,458	+		BPHYT_RS00335	0.36	+0.5
84,491	+		BPHYT_RS00335	0.39	+0.1
84,491	+		BPHYT_RS00335	0.39	-1.0
84,956	-		BPHYT_RS00335	0.86	+1.7
84,986	-		BPHYT_RS00335	0.89	+3.3
85,134	-				-0.6
85,134	-				+0.0
85,230	-		BPHYT_RS00340	0.19	-1.5
85,466	-		BPHYT_RS00340	0.59	+0.6
85,603	-		BPHYT_RS00340	0.82	+0.2
85,777	+				+1.9
85,777	+				+0.1
85,778	-				+0.1
85,786	-				+0.4
85,927	-				-0.5
85,934	+				+0.3
85,951	-				-0.1
85,951	-				-0.8
86,086	+		BPHYT_RS00345	0.12	+3.2
86,087	-		BPHYT_RS00345	0.13	+1.0