Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36480 and BPHYT_RS36485 are separated by 65 nucleotides BPHYT_RS36485 and BPHYT_RS36490 are separated by 242 nucleotides BPHYT_RS36490 and BPHYT_RS36495 are separated by 13 nucleotides BPHYT_RS36495 and BPHYT_RS36500 are separated by 418 nucleotides
BPHYT_RS36480: BPHYT_RS36480 - hypothetical protein, at 105,900 to 106,565
_RS36480
BPHYT_RS36485: BPHYT_RS36485 - hypothetical protein, at 106,631 to 107,155
_RS36485
BPHYT_RS36490: BPHYT_RS36490 - hypothetical protein, at 107,398 to 107,589
_RS36490
BPHYT_RS36495: BPHYT_RS36495 - peptidase, at 107,603 to 108,064
_RS36495
BPHYT_RS36500: BPHYT_RS36500 - hypothetical protein, at 108,483 to 108,689
_RS36500
Position (kb) 107
108 Strain fitness (log2 ratio) -2
-1
0
1
2 at 106.442 kb on - strand, within BPHYT_RS36480 at 106.551 kb on - strand at 106.829 kb on - strand, within BPHYT_RS36485 at 106.920 kb on - strand, within BPHYT_RS36485 at 107.027 kb on + strand, within BPHYT_RS36485 at 107.065 kb on - strand, within BPHYT_RS36485 at 107.352 kb on - strand at 107.352 kb on - strand at 107.619 kb on - strand at 107.624 kb on + strand at 107.895 kb on + strand, within BPHYT_RS36495 at 107.895 kb on + strand, within BPHYT_RS36495 at 107.974 kb on - strand, within BPHYT_RS36495 at 107.993 kb on - strand, within BPHYT_RS36495 at 108.125 kb on - strand at 108.134 kb on - strand at 108.313 kb on - strand at 108.376 kb on - strand at 108.541 kb on + strand, within BPHYT_RS36500 at 108.541 kb on + strand, within BPHYT_RS36500 at 108.542 kb on - strand, within BPHYT_RS36500 at 108.558 kb on + strand, within BPHYT_RS36500 at 108.559 kb on - strand, within BPHYT_RS36500 at 108.559 kb on - strand, within BPHYT_RS36500
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 106,442 - BPHYT_RS36480 0.81 +0.2 106,551 - -0.4 106,829 - BPHYT_RS36485 0.38 +0.6 106,920 - BPHYT_RS36485 0.55 +1.1 107,027 + BPHYT_RS36485 0.75 +0.0 107,065 - BPHYT_RS36485 0.83 +0.1 107,352 - -1.0 107,352 - -0.1 107,619 - +0.2 107,624 + -0.6 107,895 + BPHYT_RS36495 0.63 -0.4 107,895 + BPHYT_RS36495 0.63 -2.2 107,974 - BPHYT_RS36495 0.80 +0.2 107,993 - BPHYT_RS36495 0.84 -1.8 108,125 - -0.4 108,134 - +0.9 108,313 - +2.6 108,376 - -0.0 108,541 + BPHYT_RS36500 0.28 +0.1 108,541 + BPHYT_RS36500 0.28 +1.3 108,542 - BPHYT_RS36500 0.29 +0.1 108,558 + BPHYT_RS36500 0.36 +0.6 108,559 - BPHYT_RS36500 0.37 +0.5 108,559 - BPHYT_RS36500 0.37 -0.9
Or see this region's nucleotide sequence