Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34245
Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO1 MOI 1 |
---|---|---|---|---|---|
remove | |||||
3,283,531 | + | BPHYT_RS34240 | 0.25 | -0.4 | |
3,283,531 | + | +1.9 | |||
3,283,655 | - | BPHYT_RS34240 | 0.36 | +0.7 | |
3,284,178 | + | BPHYT_RS34240 | 0.86 | -0.1 | |
3,284,318 | + | -0.7 | |||
3,284,318 | + | +0.2 | |||
3,284,318 | + | -0.9 | |||
3,284,319 | - | +0.7 | |||
3,284,934 | + | BPHYT_RS34245 | 0.40 | -0.2 | |
3,285,567 | - | BPHYT_RS34245 | 0.82 | -0.7 | |
3,285,860 | + | -1.1 | |||
3,286,216 | + | BPHYT_RS34250 | 0.35 | -0.5 | |
3,286,216 | + | BPHYT_RS34250 | 0.35 | -1.3 | |
3,286,429 | + | BPHYT_RS34250 | 0.56 | -0.5 | |
3,286,430 | - | BPHYT_RS34250 | 0.56 | -0.5 | |
3,286,711 | + | BPHYT_RS34250 | 0.82 | +0.9 | |
3,286,711 | + | BPHYT_RS34250 | 0.82 | +1.0 | |
3,286,712 | - | BPHYT_RS34250 | 0.82 | +1.2 | |
3,286,720 | + | BPHYT_RS34250 | 0.83 | +1.1 | |
3,286,721 | - | BPHYT_RS34250 | 0.83 | +0.2 |
Or see this region's nucleotide sequence