Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32450

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
2,853,276	+		BPHYT_RS32445	0.42	-0.8
2,853,304	+		BPHYT_RS32445	0.47	-0.7
2,853,429	+		BPHYT_RS32445	0.68	-0.3
2,853,460	-		BPHYT_RS32445	0.73	+0.0
2,853,470	-		BPHYT_RS32445	0.75	+0.4
2,853,501	+		BPHYT_RS32445	0.80	-0.0
2,853,501	+		BPHYT_RS32445	0.80	-0.1
2,853,607	+				-0.4
2,853,607	+				+1.0
2,853,607	+				-0.5
2,853,607	+				+0.1
2,853,608	-				-0.6
2,853,608	-				+0.7
2,853,608	-				+0.0
2,853,635	+				-1.0
2,853,646	+				-0.5
2,853,646	+				-1.0
2,853,658	+				-0.4
2,853,659	-				-0.1
2,853,691	+				-0.6
2,853,691	+				+0.2
2,853,694	-				-0.3
2,853,741	-				+0.6
2,853,755	+				-0.6
2,853,756	-				-1.3
2,853,785	+				+0.0
2,853,808	+				-0.5
2,853,808	+				-1.3
2,853,808	+				-2.2
2,853,808	+				-1.9
2,853,809	-				-1.1
2,853,809	-				-0.3
2,853,847	+				+0.6
2,853,848	-				+1.0
2,853,851	+				-0.2
2,853,851	+				+0.4
2,853,851	+				-0.4
2,853,851	+				+0.2
2,853,947	-		BPHYT_RS32450	0.14	+1.3
2,854,039	+		BPHYT_RS32450	0.50	-0.3
2,854,040	-		BPHYT_RS32450	0.50	-0.8
2,854,137	+		BPHYT_RS32450	0.88	+0.5
2,854,138	-		BPHYT_RS32450	0.88	-0.0
2,854,139	+		BPHYT_RS32450	0.88	+0.2
2,854,162	+				+0.3
2,854,162	+				-0.3
2,854,162	+				+0.5
2,854,163	-				+0.8
2,854,163	-				-1.4
2,854,163	-				-0.9
2,854,183	+				+0.6
2,854,194	+				-2.0
2,854,194	+				-0.4
2,854,195	-				-0.1
2,854,231	+				-0.5
2,854,326	+				-0.6
2,854,348	+				-1.4
2,854,657	+		BPHYT_RS32455	0.28	+0.7
2,854,657	+		BPHYT_RS32455	0.28	+0.7
2,854,657	+		BPHYT_RS32455	0.28	-0.4
2,854,658	-		BPHYT_RS32455	0.28	-1.3
2,854,658	-		BPHYT_RS32455	0.28	-0.1
2,855,088	+		BPHYT_RS32455	0.68	+0.3
2,855,088	+		BPHYT_RS32455	0.68	+1.2
2,855,089	-		BPHYT_RS32455	0.68	+0.7