Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31305
Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO1 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,581,313 | + | -0.2 | |||
2,581,519 | - | BPHYT_RS31300 | 0.18 | -0.3 | |
2,581,643 | - | BPHYT_RS31300 | 0.34 | +1.1 | |
2,581,765 | - | BPHYT_RS31300 | 0.49 | -0.7 | |
2,582,677 | - | BPHYT_RS31305 | 0.43 | -2.3 | |
2,582,732 | + | BPHYT_RS31305 | 0.49 | -1.4 | |
2,583,221 | - | -0.1 | |||
2,583,734 | - | +0.6 | |||
2,584,195 | + | -0.3 | |||
2,584,220 | + | -1.3 |
Or see this region's nucleotide sequence