Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25010

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
1,180,002	+		BPHYT_RS25005	0.23	-0.5
1,180,003	-		BPHYT_RS25005	0.23	+0.8
1,180,747	+				+2.5
1,180,818	-		BPHYT_RS25010	0.14	+0.3
1,180,849	-		BPHYT_RS25010	0.17	+0.7
1,180,849	-		BPHYT_RS25010	0.17	-0.3
1,181,336	-		BPHYT_RS25010	0.52	-0.2
1,181,441	-		BPHYT_RS25010	0.59	-0.7
1,181,503	+		BPHYT_RS25010	0.64	-0.4
1,181,504	-		BPHYT_RS25010	0.64	-1.3
1,181,519	-		BPHYT_RS25010	0.65	+0.2
1,181,672	-		BPHYT_RS25010	0.76	-1.2
1,181,672	-		BPHYT_RS25010	0.76	-3.2
1,181,897	-				-0.8
1,181,901	+				+0.7
1,181,909	+				-1.1
1,181,910	-				-0.8
1,182,097	-				+0.7
1,182,201	-				-0.4
1,182,513	+		BPHYT_RS25015	0.46	-1.7
1,182,513	+		BPHYT_RS25015	0.46	+1.5
1,182,707	+		BPHYT_RS25015	0.81	-2.3
1,182,815	+				-0.1
1,182,815	+				+0.0
1,182,829	+				+1.3