Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24995

Experiment: 36hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24990 and BPHYT_RS24995 are separated by 5 nucleotidesBPHYT_RS24995 and BPHYT_RS25000 are separated by 471 nucleotides BPHYT_RS24990: BPHYT_RS24990 - hypothetical protein, at 1,175,409 to 1,176,968 _RS24990 BPHYT_RS24995: BPHYT_RS24995 - hypothetical protein, at 1,176,974 to 1,178,122 _RS24995 BPHYT_RS25000: BPHYT_RS25000 - MFS transporter, at 1,178,594 to 1,179,838 _RS25000 Position (kb) 1176 1177 1178 1179Strain fitness (log2 ratio) -2 -1 0 1at 1176.373 kb on - strand, within BPHYT_RS24990at 1176.373 kb on - strand, within BPHYT_RS24990at 1177.248 kb on - strand, within BPHYT_RS24995at 1177.292 kb on + strand, within BPHYT_RS24995at 1177.536 kb on - strand, within BPHYT_RS24995at 1177.709 kb on - strand, within BPHYT_RS24995at 1178.581 kb on - strandat 1178.657 kb on - strandat 1178.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1
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1,176,373 - BPHYT_RS24990 0.62 -1.8
1,176,373 - BPHYT_RS24990 0.62 -0.4
1,177,248 - BPHYT_RS24995 0.24 +0.5
1,177,292 + BPHYT_RS24995 0.28 -0.1
1,177,536 - BPHYT_RS24995 0.49 -0.6
1,177,709 - BPHYT_RS24995 0.64 -1.1
1,178,581 - +1.0
1,178,657 - -0.1
1,178,657 - +0.9

Or see this region's nucleotide sequence