Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22960 and BPHYT_RS22965 are separated by 74 nucleotides BPHYT_RS22965 and BPHYT_RS22970 are separated by 82 nucleotides BPHYT_RS22970 and BPHYT_RS22975 are separated by 273 nucleotides
BPHYT_RS22960: BPHYT_RS22960 - peptidase, at 708,607 to 710,145
_RS22960
BPHYT_RS22965: BPHYT_RS22965 - ligand-gated channel protein, at 710,220 to 712,634
_RS22965
BPHYT_RS22970: BPHYT_RS22970 - hypothetical protein, at 712,717 to 713,127
_RS22970
BPHYT_RS22975: BPHYT_RS22975 - hypothetical protein, at 713,401 to 715,545
_RS22975
Position (kb) 710
711
712
713 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 709.994 kb on + strand at 709.995 kb on - strand at 710.273 kb on - strand at 710.341 kb on + strand at 710.483 kb on - strand, within BPHYT_RS22965 at 710.527 kb on + strand, within BPHYT_RS22965 at 710.767 kb on - strand, within BPHYT_RS22965 at 710.808 kb on + strand, within BPHYT_RS22965 at 710.808 kb on + strand, within BPHYT_RS22965 at 710.997 kb on - strand, within BPHYT_RS22965 at 710.998 kb on + strand, within BPHYT_RS22965 at 711.224 kb on - strand, within BPHYT_RS22965 at 711.284 kb on - strand, within BPHYT_RS22965 at 711.521 kb on - strand, within BPHYT_RS22965 at 711.553 kb on + strand at 711.758 kb on - strand, within BPHYT_RS22965 at 711.758 kb on - strand, within BPHYT_RS22965 at 711.763 kb on + strand, within BPHYT_RS22965 at 712.052 kb on - strand, within BPHYT_RS22965 at 712.072 kb on + strand, within BPHYT_RS22965 at 712.135 kb on + strand, within BPHYT_RS22965 at 712.177 kb on + strand, within BPHYT_RS22965 at 712.279 kb on + strand, within BPHYT_RS22965 at 712.279 kb on + strand, within BPHYT_RS22965 at 712.279 kb on + strand, within BPHYT_RS22965 at 712.280 kb on - strand, within BPHYT_RS22965 at 712.280 kb on - strand, within BPHYT_RS22965 at 712.538 kb on - strand at 713.139 kb on + strand at 713.140 kb on - strand at 713.157 kb on + strand at 713.195 kb on + strand at 713.272 kb on + strand at 713.272 kb on + strand at 713.273 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 709,994 + -0.3 709,995 - +0.7 710,273 - -1.5 710,341 + -0.2 710,483 - BPHYT_RS22965 0.11 +2.6 710,527 + BPHYT_RS22965 0.13 +0.2 710,767 - BPHYT_RS22965 0.23 +0.6 710,808 + BPHYT_RS22965 0.24 +0.4 710,808 + BPHYT_RS22965 0.24 +0.2 710,997 - BPHYT_RS22965 0.32 +0.7 710,998 + BPHYT_RS22965 0.32 -0.1 711,224 - BPHYT_RS22965 0.42 +0.0 711,284 - BPHYT_RS22965 0.44 +0.4 711,521 - BPHYT_RS22965 0.54 +0.1 711,553 + +4.2 711,758 - BPHYT_RS22965 0.64 -0.0 711,758 - BPHYT_RS22965 0.64 +0.5 711,763 + BPHYT_RS22965 0.64 +0.3 712,052 - BPHYT_RS22965 0.76 +0.8 712,072 + BPHYT_RS22965 0.77 +0.2 712,135 + BPHYT_RS22965 0.79 +0.6 712,177 + BPHYT_RS22965 0.81 -2.1 712,279 + BPHYT_RS22965 0.85 +0.4 712,279 + BPHYT_RS22965 0.85 +0.9 712,279 + BPHYT_RS22965 0.85 +1.6 712,280 - BPHYT_RS22965 0.85 +0.1 712,280 - BPHYT_RS22965 0.85 +0.2 712,538 - +0.0 713,139 + +0.3 713,140 - -0.6 713,157 + +0.9 713,195 + +0.3 713,272 + -0.8 713,272 + -0.6 713,273 - -2.3
Or see this region's nucleotide sequence