Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21730 and BPHYT_RS21735 are separated by 42 nucleotides BPHYT_RS21735 and BPHYT_RS21740 are separated by 118 nucleotides BPHYT_RS21740 and BPHYT_RS21745 are separated by 205 nucleotides
BPHYT_RS21730: BPHYT_RS21730 - 2-aminoadipate aminotransferase, at 431,369 to 432,895
_RS21730
BPHYT_RS21735: BPHYT_RS21735 - IclR family transcriptional regulator, at 432,938 to 433,690
_RS21735
BPHYT_RS21740: BPHYT_RS21740 - IclR family transcriptional regulator, at 433,809 to 434,645
_RS21740
BPHYT_RS21745: BPHYT_RS21745 - choline dehydrogenase, at 434,851 to 436,506
_RS21745
Position (kb) 433
434
435 Strain fitness (log2 ratio) -1
0
1 at 433.048 kb on + strand, within BPHYT_RS21735 at 433.126 kb on + strand, within BPHYT_RS21735 at 433.350 kb on + strand, within BPHYT_RS21735 at 433.350 kb on + strand, within BPHYT_RS21735 at 433.351 kb on - strand, within BPHYT_RS21735 at 433.725 kb on + strand at 434.097 kb on - strand, within BPHYT_RS21740 at 434.097 kb on - strand, within BPHYT_RS21740 at 434.263 kb on + strand, within BPHYT_RS21740 at 434.263 kb on + strand, within BPHYT_RS21740 at 434.456 kb on - strand at 434.715 kb on + strand at 435.043 kb on + strand, within BPHYT_RS21745 at 435.044 kb on - strand, within BPHYT_RS21745 at 435.136 kb on + strand, within BPHYT_RS21745 at 435.137 kb on - strand, within BPHYT_RS21745 at 435.137 kb on - strand, within BPHYT_RS21745 at 435.404 kb on - strand, within BPHYT_RS21745 at 435.452 kb on - strand, within BPHYT_RS21745
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 433,048 + BPHYT_RS21735 0.15 -1.2 433,126 + BPHYT_RS21735 0.25 +0.8 433,350 + BPHYT_RS21735 0.55 -0.2 433,350 + BPHYT_RS21735 0.55 -0.2 433,351 - BPHYT_RS21735 0.55 -0.1 433,725 + -0.7 434,097 - BPHYT_RS21740 0.34 -1.6 434,097 - BPHYT_RS21740 0.34 -0.7 434,263 + BPHYT_RS21740 0.54 -0.1 434,263 + BPHYT_RS21740 0.54 +0.0 434,456 - +0.6 434,715 + -0.4 435,043 + BPHYT_RS21745 0.12 +0.2 435,044 - BPHYT_RS21745 0.12 -0.1 435,136 + BPHYT_RS21745 0.17 -0.7 435,137 - BPHYT_RS21745 0.17 +0.7 435,137 - BPHYT_RS21745 0.17 +0.3 435,404 - BPHYT_RS21745 0.33 +0.7 435,452 - BPHYT_RS21745 0.36 -0.5
Or see this region's nucleotide sequence