Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20850 and BPHYT_RS20855 are separated by 126 nucleotides BPHYT_RS20855 and BPHYT_RS20860 are separated by 204 nucleotides BPHYT_RS20860 and BPHYT_RS20865 are separated by 33 nucleotides
BPHYT_RS20850: BPHYT_RS20850 - multidrug DMT transporter permease, at 240,281 to 241,123
_RS20850
BPHYT_RS20855: BPHYT_RS20855 - transcriptional regulator, at 241,250 to 242,158
_RS20855
BPHYT_RS20860: BPHYT_RS20860 - hypothetical protein, at 242,363 to 242,686
_RS20860
BPHYT_RS20865: BPHYT_RS20865 - 2-hydroxyacid dehydrogenase, at 242,720 to 243,685
_RS20865
Position (kb) 241
242
243 Strain fitness (log2 ratio) -1
0
1
2 at 240.460 kb on - strand, within BPHYT_RS20850 at 240.606 kb on + strand, within BPHYT_RS20850 at 240.661 kb on - strand, within BPHYT_RS20850 at 240.661 kb on - strand, within BPHYT_RS20850 at 241.184 kb on + strand at 241.184 kb on + strand at 241.185 kb on - strand at 241.188 kb on + strand at 241.196 kb on - strand at 241.216 kb on - strand at 241.216 kb on - strand at 241.339 kb on - strand at 241.673 kb on + strand, within BPHYT_RS20855 at 241.674 kb on - strand, within BPHYT_RS20855 at 241.709 kb on + strand, within BPHYT_RS20855 at 241.709 kb on + strand, within BPHYT_RS20855 at 241.709 kb on + strand, within BPHYT_RS20855 at 241.710 kb on - strand, within BPHYT_RS20855 at 241.710 kb on - strand, within BPHYT_RS20855 at 241.710 kb on - strand, within BPHYT_RS20855 at 241.715 kb on + strand, within BPHYT_RS20855 at 241.829 kb on - strand, within BPHYT_RS20855 at 241.953 kb on + strand, within BPHYT_RS20855 at 241.954 kb on - strand, within BPHYT_RS20855 at 242.060 kb on + strand, within BPHYT_RS20855 at 242.061 kb on - strand, within BPHYT_RS20855 at 242.128 kb on + strand at 242.229 kb on + strand at 242.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 240,460 - BPHYT_RS20850 0.21 -0.4 240,606 + BPHYT_RS20850 0.39 -0.6 240,661 - BPHYT_RS20850 0.45 -0.2 240,661 - BPHYT_RS20850 0.45 -0.7 241,184 + -0.3 241,184 + -0.3 241,185 - +1.9 241,188 + -0.5 241,196 - -0.3 241,216 - -0.1 241,216 - -0.1 241,339 - -0.1 241,673 + BPHYT_RS20855 0.47 +1.1 241,674 - BPHYT_RS20855 0.47 -0.8 241,709 + BPHYT_RS20855 0.50 -0.6 241,709 + BPHYT_RS20855 0.50 -0.4 241,709 + BPHYT_RS20855 0.50 -0.1 241,710 - BPHYT_RS20855 0.51 +0.2 241,710 - BPHYT_RS20855 0.51 +0.6 241,710 - BPHYT_RS20855 0.51 +0.2 241,715 + BPHYT_RS20855 0.51 -0.2 241,829 - BPHYT_RS20855 0.64 +1.5 241,953 + BPHYT_RS20855 0.77 -0.2 241,954 - BPHYT_RS20855 0.77 -0.8 242,060 + BPHYT_RS20855 0.89 +0.5 242,061 - BPHYT_RS20855 0.89 +0.1 242,128 + +0.3 242,229 + -0.8 242,785 - -0.2
Or see this region's nucleotide sequence