Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20445

Experiment: 36hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20440 and BPHYT_RS20445 are separated by 15 nucleotidesBPHYT_RS20445 and BPHYT_RS20450 are separated by 51 nucleotides BPHYT_RS20440: BPHYT_RS20440 - IclR family transcriptional regulator, at 148,770 to 149,552 _RS20440 BPHYT_RS20445: BPHYT_RS20445 - NAD-dependent dehydratase, at 149,568 to 150,632 _RS20445 BPHYT_RS20450: BPHYT_RS20450 - 6-chlorohydroxyquinol-1,2-dioxygenase, at 150,684 to 151,547 _RS20450 Position (kb) 149 150 151Strain fitness (log2 ratio) -1 0 1at 148.675 kb on - strandat 149.426 kb on + strand, within BPHYT_RS20440at 150.067 kb on + strand, within BPHYT_RS20445at 150.068 kb on - strand, within BPHYT_RS20445at 150.196 kb on + strand, within BPHYT_RS20445at 150.196 kb on + strand, within BPHYT_RS20445at 150.197 kb on - strand, within BPHYT_RS20445at 150.199 kb on + strand, within BPHYT_RS20445at 150.199 kb on + strand, within BPHYT_RS20445at 150.290 kb on - strand, within BPHYT_RS20445at 150.290 kb on - strand, within BPHYT_RS20445at 150.638 kb on + strandat 150.638 kb on + strandat 150.874 kb on + strand, within BPHYT_RS20450at 150.944 kb on + strand, within BPHYT_RS20450at 151.078 kb on + strand, within BPHYT_RS20450at 151.079 kb on - strand, within BPHYT_RS20450at 151.079 kb on - strand, within BPHYT_RS20450

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1
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148,675 - +0.1
149,426 + BPHYT_RS20440 0.84 -0.6
150,067 + BPHYT_RS20445 0.47 -0.3
150,068 - BPHYT_RS20445 0.47 +0.4
150,196 + BPHYT_RS20445 0.59 -0.7
150,196 + BPHYT_RS20445 0.59 -1.2
150,197 - BPHYT_RS20445 0.59 -0.3
150,199 + BPHYT_RS20445 0.59 -1.5
150,199 + BPHYT_RS20445 0.59 -0.5
150,290 - BPHYT_RS20445 0.68 +0.6
150,290 - BPHYT_RS20445 0.68 -1.5
150,638 + +0.1
150,638 + +0.2
150,874 + BPHYT_RS20450 0.22 +0.2
150,944 + BPHYT_RS20450 0.30 +1.7
151,078 + BPHYT_RS20450 0.46 +1.1
151,079 - BPHYT_RS20450 0.46 +0.9
151,079 - BPHYT_RS20450 0.46 -0.1

Or see this region's nucleotide sequence