Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19925

Experiment: 36hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19915 and BPHYT_RS19920 are separated by 37 nucleotidesBPHYT_RS19920 and BPHYT_RS19925 are separated by 66 nucleotidesBPHYT_RS19925 and BPHYT_RS19930 overlap by 1 nucleotides BPHYT_RS19915: BPHYT_RS19915 - hemolysin D, at 12,320 to 13,693 _RS19915 BPHYT_RS19920: BPHYT_RS19920 - peptidyl-prolyl cis-trans isomerase, at 13,731 to 14,483 _RS19920 BPHYT_RS19925: BPHYT_RS19925 - peptidase C39, at 14,550 to 17,606 _RS19925 BPHYT_RS19930: BPHYT_RS19930 - transcriptional regulator, at 17,606 to 18,961 _RS19930 Position (kb) 14 15 16 17 18Strain fitness (log2 ratio) -1 0 1at 14.022 kb on + strand, within BPHYT_RS19920at 14.667 kb on + strandat 14.740 kb on + strandat 15.033 kb on + strand, within BPHYT_RS19925at 15.754 kb on + strand, within BPHYT_RS19925at 17.122 kb on - strand, within BPHYT_RS19925at 17.423 kb on + strandat 18.533 kb on + strand, within BPHYT_RS19930at 18.533 kb on + strand, within BPHYT_RS19930

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1
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14,022 + BPHYT_RS19920 0.39 +0.9
14,667 + -0.9
14,740 + -0.2
15,033 + BPHYT_RS19925 0.16 -0.2
15,754 + BPHYT_RS19925 0.39 +0.3
17,122 - BPHYT_RS19925 0.84 -0.5
17,423 + -0.0
18,533 + BPHYT_RS19930 0.68 -0.9
18,533 + BPHYT_RS19930 0.68 -0.6

Or see this region's nucleotide sequence