Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19275

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
4,325,426	+				-0.9
4,325,426	+				-0.5
4,325,495	+				+1.9
4,325,495	+				+0.5
4,325,496	-				-0.2
4,325,496	-				+0.5
4,325,582	+				-1.0
4,325,583	-				-0.7
4,325,591	+				-1.7
4,325,897	+				-0.0
4,326,050	+				-1.4
4,326,068	+				+0.3
4,326,068	+				-0.3
4,326,388	+		BPHYT_RS19275	0.38	+1.9
4,326,389	-		BPHYT_RS19275	0.38	+0.7
4,326,399	+		BPHYT_RS19275	0.39	+0.2
4,326,400	-		BPHYT_RS19275	0.39	+1.1
4,326,450	+		BPHYT_RS19275	0.45	-0.3
4,326,450	+		BPHYT_RS19275	0.45	+1.9
4,326,465	-		BPHYT_RS19275	0.47	+0.1
4,326,770	-		BPHYT_RS19275	0.83	-0.8
4,326,935	+				-1.7
4,327,020	+				-0.5
4,327,083	+				-0.3
4,327,083	+				-0.6
4,327,083	+				-0.9
4,327,084	-				+0.0
4,327,085	+				+0.0
4,327,254	+		BPHYT_RS19280	0.12	-0.0
4,327,257	+		BPHYT_RS19280	0.12	-0.5
4,327,278	-		BPHYT_RS19280	0.12	-1.9
4,327,282	+		BPHYT_RS19280	0.13	+0.1
4,327,326	+		BPHYT_RS19280	0.14	+1.3
4,327,326	+		BPHYT_RS19280	0.14	-1.3
4,327,327	-		BPHYT_RS19280	0.14	-0.3
4,327,329	+		BPHYT_RS19280	0.14	-0.4
4,327,329	+		BPHYT_RS19280	0.14	-0.0
4,327,330	-		BPHYT_RS19280	0.14	-1.1
4,327,330	-		BPHYT_RS19280	0.14	-0.9
4,327,347	+		BPHYT_RS19280	0.15	-2.0
4,327,386	+		BPHYT_RS19280	0.16	+0.5
4,327,386	+		BPHYT_RS19280	0.16	-0.8
4,327,386	+		BPHYT_RS19280	0.16	-0.7
4,327,386	+		BPHYT_RS19280	0.16	+0.9
4,327,386	+		BPHYT_RS19280	0.16	-0.7
4,327,386	+		BPHYT_RS19280	0.16	-0.3
4,327,386	+		BPHYT_RS19280	0.16	-2.6
4,327,386	+		BPHYT_RS19280	0.16	-0.6
4,327,386	+		BPHYT_RS19280	0.16	-2.2
4,327,387	-		BPHYT_RS19280	0.16	+1.6
4,327,387	-		BPHYT_RS19280	0.16	-0.3
4,327,387	-		BPHYT_RS19280	0.16	-0.5
4,327,599	-		BPHYT_RS19280	0.24	-0.3
4,327,646	+		BPHYT_RS19280	0.25	-0.2
4,327,647	-		BPHYT_RS19280	0.25	-0.0
4,327,770	+		BPHYT_RS19280	0.30	-1.0
4,327,770	+		BPHYT_RS19280	0.30	+0.5
4,327,770	+		BPHYT_RS19280	0.30	-1.2
4,327,771	-		BPHYT_RS19280	0.30	+0.2
4,327,771	-		BPHYT_RS19280	0.30	+0.5
4,327,771	-		BPHYT_RS19280	0.30	-0.1