Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18850 and BPHYT_RS18855 are separated by 337 nucleotides BPHYT_RS18855 and BPHYT_RS18860 are separated by 12 nucleotides
BPHYT_RS18850: BPHYT_RS18850 - Flagellar brake protein YcgR 1, at 4,236,882 to 4,237,655
_RS18850
BPHYT_RS18855: BPHYT_RS18855 - flagellar rod assembly protein FlgJ, at 4,237,993 to 4,238,991
_RS18855
BPHYT_RS18860: BPHYT_RS18860 - flagellar P-ring protein FlgI, at 4,239,004 to 4,240,191
_RS18860
Position (kb) 4237
4238
4239 Strain fitness (log2 ratio) -1
0
1
2 at 4237.209 kb on + strand, within BPHYT_RS18850 at 4237.209 kb on + strand, within BPHYT_RS18850 at 4237.210 kb on - strand, within BPHYT_RS18850 at 4237.210 kb on - strand, within BPHYT_RS18850 at 4237.210 kb on - strand, within BPHYT_RS18850 at 4237.210 kb on - strand, within BPHYT_RS18850 at 4237.247 kb on - strand, within BPHYT_RS18850 at 4237.264 kb on + strand, within BPHYT_RS18850 at 4237.265 kb on - strand, within BPHYT_RS18850 at 4237.646 kb on + strand at 4237.647 kb on - strand at 4237.647 kb on - strand at 4237.650 kb on - strand at 4237.650 kb on - strand at 4237.650 kb on - strand at 4237.760 kb on + strand at 4237.760 kb on + strand at 4237.761 kb on - strand at 4237.761 kb on - strand at 4237.916 kb on + strand at 4237.917 kb on - strand at 4238.034 kb on - strand at 4238.148 kb on - strand, within BPHYT_RS18855 at 4238.169 kb on - strand, within BPHYT_RS18855 at 4238.223 kb on - strand, within BPHYT_RS18855 at 4238.223 kb on - strand, within BPHYT_RS18855 at 4238.223 kb on - strand, within BPHYT_RS18855 at 4238.422 kb on - strand, within BPHYT_RS18855 at 4238.496 kb on - strand, within BPHYT_RS18855 at 4238.653 kb on + strand, within BPHYT_RS18855 at 4238.654 kb on - strand, within BPHYT_RS18855 at 4238.980 kb on - strand at 4239.005 kb on + strand at 4239.005 kb on + strand at 4239.005 kb on + strand at 4239.005 kb on + strand at 4239.006 kb on - strand at 4239.006 kb on - strand at 4239.006 kb on - strand at 4239.088 kb on + strand at 4239.089 kb on - strand at 4239.089 kb on - strand at 4239.244 kb on - strand, within BPHYT_RS18860 at 4239.275 kb on - strand, within BPHYT_RS18860 at 4239.518 kb on + strand, within BPHYT_RS18860 at 4239.519 kb on - strand, within BPHYT_RS18860 at 4239.698 kb on + strand, within BPHYT_RS18860 at 4239.699 kb on - strand, within BPHYT_RS18860 at 4239.699 kb on - strand, within BPHYT_RS18860 at 4239.699 kb on - strand, within BPHYT_RS18860
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 4,237,209 + BPHYT_RS18850 0.42 +0.9 4,237,209 + BPHYT_RS18850 0.42 -0.4 4,237,210 - BPHYT_RS18850 0.42 +2.1 4,237,210 - BPHYT_RS18850 0.42 -0.1 4,237,210 - BPHYT_RS18850 0.42 +0.3 4,237,210 - BPHYT_RS18850 0.42 -0.8 4,237,247 - BPHYT_RS18850 0.47 -0.5 4,237,264 + BPHYT_RS18850 0.49 -0.4 4,237,265 - BPHYT_RS18850 0.49 +1.4 4,237,646 + -0.8 4,237,647 - -0.7 4,237,647 - +0.6 4,237,650 - +0.1 4,237,650 - -0.4 4,237,650 - -1.1 4,237,760 + -0.7 4,237,760 + -0.8 4,237,761 - -0.1 4,237,761 - +0.2 4,237,916 + -0.1 4,237,917 - +0.6 4,238,034 - +0.0 4,238,148 - BPHYT_RS18855 0.16 -0.1 4,238,169 - BPHYT_RS18855 0.18 +0.1 4,238,223 - BPHYT_RS18855 0.23 +0.4 4,238,223 - BPHYT_RS18855 0.23 -0.5 4,238,223 - BPHYT_RS18855 0.23 -1.6 4,238,422 - BPHYT_RS18855 0.43 -0.2 4,238,496 - BPHYT_RS18855 0.50 +0.2 4,238,653 + BPHYT_RS18855 0.66 +1.0 4,238,654 - BPHYT_RS18855 0.66 +0.2 4,238,980 - +1.0 4,239,005 + -0.3 4,239,005 + -0.6 4,239,005 + -0.6 4,239,005 + +0.4 4,239,006 - +0.8 4,239,006 - -0.1 4,239,006 - +1.3 4,239,088 + -0.4 4,239,089 - +0.4 4,239,089 - -0.3 4,239,244 - BPHYT_RS18860 0.20 -0.5 4,239,275 - BPHYT_RS18860 0.23 +0.1 4,239,518 + BPHYT_RS18860 0.43 -0.2 4,239,519 - BPHYT_RS18860 0.43 +1.6 4,239,698 + BPHYT_RS18860 0.58 -0.9 4,239,699 - BPHYT_RS18860 0.59 -1.0 4,239,699 - BPHYT_RS18860 0.59 -1.6 4,239,699 - BPHYT_RS18860 0.59 +0.1
Or see this region's nucleotide sequence