Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16225

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
3,681,789	+				-0.2
3,681,789	+				+0.5
3,681,852	+		BPHYT_RS16220	0.13	+1.5
3,682,137	+		BPHYT_RS16220	0.56	+2.5
3,682,415	+				-2.1
3,682,467	+				-1.1
3,682,694	+				-0.6
3,682,694	+				-0.3
3,682,694	+				-0.4
3,682,694	+				-0.7
3,682,694	+				+0.1
3,682,695	-				-0.6
3,682,695	-				+0.3
3,682,695	-				-0.3
3,682,695	-				-0.9
3,682,695	-				-0.0
3,682,695	-				-0.7
3,682,695	-				-0.3
3,682,695	-				-0.2
3,682,695	-				-0.9
3,682,695	-				-0.5
3,682,695	-				-0.9
3,682,698	+				-2.1
3,682,698	+				+0.8
3,682,698	+				+0.1
3,682,698	+				-0.3
3,682,698	+				-0.5
3,682,698	+				+0.5
3,682,698	+				-0.1
3,682,698	+				-0.5
3,682,699	-				-0.6
3,682,699	-				+0.5
3,682,699	-				+0.5
3,682,699	-				-0.7
3,682,699	-				-0.5
3,682,699	-				-0.0
3,682,804	+				+0.5
3,683,007	+		BPHYT_RS16225	0.20	-0.2
3,683,123	+		BPHYT_RS16225	0.27	-1.2
3,683,223	-		BPHYT_RS16225	0.33	-0.3
3,683,223	-		BPHYT_RS16225	0.33	-0.6
3,683,223	-		BPHYT_RS16225	0.33	-1.5
3,683,223	-		BPHYT_RS16225	0.33	-1.3
3,683,340	-		BPHYT_RS16225	0.39	+0.4
3,683,340	-		BPHYT_RS16225	0.39	+0.6
3,683,423	+		BPHYT_RS16225	0.44	-0.4
3,683,423	+		BPHYT_RS16225	0.44	-2.1
3,683,423	+		BPHYT_RS16225	0.44	-0.8
3,683,423	+				+1.5
3,683,424	-		BPHYT_RS16225	0.44	-1.2
3,683,487	+		BPHYT_RS16225	0.48	-1.1
3,683,830	+		BPHYT_RS16225	0.67	+2.5
3,683,830	+		BPHYT_RS16225	0.67	-0.1
3,683,831	-		BPHYT_RS16225	0.67	-1.3
3,683,966	+		BPHYT_RS16225	0.75	+0.6
3,683,966	+		BPHYT_RS16225	0.75	-0.7
3,683,966	+		BPHYT_RS16225	0.75	-1.1
3,683,967	-		BPHYT_RS16225	0.75	-1.1
3,683,967	-		BPHYT_RS16225	0.75	-2.1
3,684,036	+		BPHYT_RS16225	0.79	-1.4
3,684,037	-		BPHYT_RS16225	0.79	-0.9
3,684,227	+				+2.5
3,684,228	-		BPHYT_RS16225	0.90	-0.8
3,684,228	-		BPHYT_RS16225	0.90	-1.1
3,684,228	-		BPHYT_RS16225	0.90	-0.8
3,684,228	-		BPHYT_RS16225	0.90	-1.4
3,684,305	+				-0.3
3,684,305	+				-0.2
3,684,305	+				-1.1
3,684,306	-				-0.8
3,684,306	-				-1.3
3,684,417	+				+0.4
3,684,452	+				-0.1
3,684,483	-				-0.2
3,684,483	-				-0.2
3,684,486	+				+1.3
3,684,486	+				+0.5
3,684,487	-				-1.2
3,684,487	-				+0.1
3,684,489	+				+0.7
3,684,489	+				+0.2
3,684,490	-				-0.0
3,684,490	-				-0.2
3,684,708	-		BPHYT_RS16230	0.11	-0.5
3,684,709	+		BPHYT_RS16230	0.11	-0.3
3,684,709	+		BPHYT_RS16230	0.11	-1.3
3,684,709	+		BPHYT_RS16230	0.11	-1.3
3,684,710	-		BPHYT_RS16230	0.12	-0.6
3,684,710	-		BPHYT_RS16230	0.12	-0.7
3,684,710	-		BPHYT_RS16230	0.12	-0.5
3,684,798	-		BPHYT_RS16230	0.21	-0.1
3,684,827	+		BPHYT_RS16230	0.24	-0.0
3,684,827	+		BPHYT_RS16230	0.24	-0.6
3,684,828	-		BPHYT_RS16230	0.24	+2.3
3,684,828	-		BPHYT_RS16230	0.24	-0.8
3,684,887	+		BPHYT_RS16230	0.30	-1.5
3,684,887	+				+0.2
3,684,891	-		BPHYT_RS16230	0.30	-1.0
3,684,891	-		BPHYT_RS16230	0.30	-1.3
3,685,001	+		BPHYT_RS16230	0.42	-0.2
3,685,002	-		BPHYT_RS16230	0.42	+1.5
3,685,115	-		BPHYT_RS16230	0.54	-1.7
3,685,149	-		BPHYT_RS16230	0.57	-0.9
3,685,160	-		BPHYT_RS16230	0.58	-1.3
3,685,203	-		BPHYT_RS16230	0.63	-1.2
3,685,205	-		BPHYT_RS16230	0.63	-0.1
3,685,217	+		BPHYT_RS16230	0.64	-0.2
3,685,218	-		BPHYT_RS16230	0.64	-0.2
3,685,218	-		BPHYT_RS16230	0.64	+0.0
3,685,259	+		BPHYT_RS16230	0.69	-1.0
3,685,259	+		BPHYT_RS16230	0.69	-0.5
3,685,260	-		BPHYT_RS16230	0.69	+0.0
3,685,260	-		BPHYT_RS16230	0.69	+0.4
3,685,319	+		BPHYT_RS16230	0.75	-0.0
3,685,320	-		BPHYT_RS16230	0.75	+0.1
3,685,320	-		BPHYT_RS16230	0.75	+0.2
3,685,320	-		BPHYT_RS16230	0.75	+0.0