Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15890

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
3,606,820	+				+0.4
3,606,820	+				-1.6
3,606,824	+				-0.5
3,606,824	+				-1.6
3,607,505	+				-1.1
3,607,709	+				-0.8
3,607,710	-				+0.3
3,607,738	-				-1.0
3,607,753	+				-0.5
3,608,445	+		BPHYT_RS15890	0.88	-1.2
3,608,535	+				+0.4
3,608,535	+				-0.2
3,608,791	-		BPHYT_RS15895	0.15	-0.5
3,608,791	-		BPHYT_RS15895	0.15	-1.2
3,608,907	+		BPHYT_RS15895	0.29	-1.0
3,608,932	+		BPHYT_RS15895	0.32	-0.6
3,608,932	+		BPHYT_RS15895	0.32	-0.8
3,609,016	-		BPHYT_RS15895	0.42	-2.0
3,609,108	-		BPHYT_RS15895	0.53	-1.3
3,609,175	-		BPHYT_RS15895	0.61	-1.0
3,609,249	+		BPHYT_RS15895	0.70	-0.6
3,609,250	-		BPHYT_RS15895	0.70	-0.2
3,609,250	-		BPHYT_RS15895	0.70	-0.2
3,609,250	-		BPHYT_RS15895	0.70	-0.4
3,609,253	-		BPHYT_RS15895	0.70	-0.6
3,609,486	+				-0.1
3,609,486	+				-0.0
3,609,534	-				+0.5