Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14340

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
3,273,262	-				-0.2
3,273,262	-				+0.0
3,273,262	-				-0.5
3,273,350	+				-1.6
3,273,350	+				-1.6
3,273,351	-				+0.6
3,273,351	-				+0.3
3,273,397	-				+0.6
3,273,399	-				-0.5
3,273,579	-		BPHYT_RS14335	0.67	+1.3
3,273,665	+				-0.4
3,273,666	-				-0.7
3,273,666	-				+0.6
3,273,696	-				+0.2
3,273,696	-				+0.4
3,273,696	-				+0.5
3,273,714	-				+0.3
3,273,799	+				+0.2
3,273,800	-				+0.1
3,273,800	-				+1.0
3,273,800	-				+0.5
3,273,800	-				-0.1
3,273,834	-				+0.4
3,273,834	-				+0.5
3,273,841	-				+0.1
3,273,923	-				+0.7
3,274,008	-				+1.5
3,274,272	+		BPHYT_RS14340	0.22	+0.5
3,274,335	+		BPHYT_RS14340	0.26	+0.6
3,274,335	+		BPHYT_RS14340	0.26	+0.3
3,274,335	+		BPHYT_RS14340	0.26	+0.9
3,274,384	+		BPHYT_RS14340	0.30	+1.1
3,274,385	-		BPHYT_RS14340	0.30	+1.7
3,274,385	-		BPHYT_RS14340	0.30	+0.4
3,274,434	+		BPHYT_RS14340	0.33	+1.8
3,274,434	+		BPHYT_RS14340	0.33	+1.1
3,274,435	-		BPHYT_RS14340	0.33	-0.5
3,274,452	-		BPHYT_RS14340	0.35	-0.3
3,274,779	-		BPHYT_RS14340	0.58	-0.6
3,274,779	-		BPHYT_RS14340	0.58	+1.5
3,274,779	-		BPHYT_RS14340	0.58	+0.0
3,274,779	-		BPHYT_RS14340	0.58	+0.8
3,274,779	-		BPHYT_RS14340	0.58	+0.5
3,275,061	+		BPHYT_RS14340	0.79	+0.4
3,275,062	-		BPHYT_RS14340	0.79	+0.5
3,275,080	+		BPHYT_RS14340	0.80	-0.1
3,275,080	+		BPHYT_RS14340	0.80	+0.2
3,275,080	+		BPHYT_RS14340	0.80	-0.1
3,275,080	+		BPHYT_RS14340	0.80	+0.2
3,275,081	-		BPHYT_RS14340	0.80	+0.4
3,275,112	+		BPHYT_RS14340	0.82	+0.2
3,275,320	+				+0.1
3,275,320	+				+0.6
3,275,320	+				+0.8
3,275,320	+				+0.7
3,275,321	-				+0.8
3,275,322	+				+0.9
3,275,322	+				+0.3
3,275,322	+				+0.3
3,275,339	+				+0.2
3,275,339	+				-1.3
3,275,339	+				+0.2
3,275,340	-				+0.0
3,275,340	-				+1.2
3,275,340	-				+0.4
3,275,353	-				-0.7
3,275,407	+				-0.2
3,275,407	+				-0.5
3,275,456	+				+0.2
3,275,495	+				+0.0
3,275,873	+		BPHYT_RS14345	0.41	+2.5
3,276,093	-		BPHYT_RS14345	0.62	+0.9
3,276,161	+		BPHYT_RS14345	0.69	-2.6
3,276,162	-		BPHYT_RS14345	0.69	-0.8
3,276,162	-		BPHYT_RS14345	0.69	-1.1
3,276,162	-		BPHYT_RS14345	0.69	+2.5