Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12700

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
2,894,486	+		BPHYT_RS12695	0.29	-1.8
2,894,487	-		BPHYT_RS12695	0.29	-0.7
2,894,488	+		BPHYT_RS12695	0.30	-0.2
2,894,488	+		BPHYT_RS12695	0.30	-0.9
2,894,488	+		BPHYT_RS12695	0.30	+0.0
2,894,488	+		BPHYT_RS12695	0.30	+0.2
2,894,488	+		BPHYT_RS12695	0.30	-0.1
2,894,489	-		BPHYT_RS12695	0.30	-1.1
2,894,489	-		BPHYT_RS12695	0.30	-0.2
2,894,489	-		BPHYT_RS12695	0.30	-1.0
2,894,569	+		BPHYT_RS12695	0.40	+0.5
2,894,729	+		BPHYT_RS12695	0.60	-0.6
2,894,730	-		BPHYT_RS12695	0.60	-1.5
2,894,730	-		BPHYT_RS12695	0.60	+0.4
2,894,730	-		BPHYT_RS12695	0.60	-0.6
2,894,822	-		BPHYT_RS12695	0.71	+0.2
2,894,863	+		BPHYT_RS12695	0.76	+1.2
2,894,864	-		BPHYT_RS12695	0.76	-0.3
2,894,864	-		BPHYT_RS12695	0.76	+0.1
2,894,864	-		BPHYT_RS12695	0.76	+2.1
2,894,864	-		BPHYT_RS12695	0.76	-0.4
2,894,968	+		BPHYT_RS12695	0.89	-0.3
2,894,969	-		BPHYT_RS12695	0.89	+0.7
2,895,137	+				+2.5
2,895,137	+				-0.6
2,895,137	+				+0.5
2,895,138	-				-0.7
2,895,252	-				-0.3
2,895,252	-				-0.1
2,895,252	-				+0.1
2,895,330	+				-0.9
2,895,380	+				+0.3
2,895,381	-				+0.9
2,895,381	-				-1.9
2,895,410	-				-0.6
2,895,569	-		BPHYT_RS12700	0.14	-0.2
2,895,569	-		BPHYT_RS12700	0.14	-0.2
2,895,569	-		BPHYT_RS12700	0.14	-0.9
2,895,574	+		BPHYT_RS12700	0.14	-0.1
2,895,575	-		BPHYT_RS12700	0.15	+1.1
2,895,875	-		BPHYT_RS12700	0.25	-0.7
2,896,395	+		BPHYT_RS12700	0.44	-0.6
2,896,396	-		BPHYT_RS12700	0.44	+0.1
2,896,936	+		BPHYT_RS12700	0.63	+0.8
2,896,936	+		BPHYT_RS12700	0.63	-0.8
2,896,970	-		BPHYT_RS12700	0.65	-1.2
2,897,175	+		BPHYT_RS12700	0.72	-0.8
2,897,621	-		BPHYT_RS12700	0.88	-0.7
2,897,621	-		BPHYT_RS12700	0.88	-1.2
2,897,734	+				+1.9
2,897,734	+				-0.4
2,897,734	+				-0.1
2,897,735	-				-0.2
2,897,746	+				-0.6
2,897,747	-				-1.3
2,897,747	-				-0.5
2,897,770	+				-0.1
2,897,771	-				-1.4
2,898,072	+				-0.2
2,898,073	-				-0.1
2,898,073	-				+0.4
2,898,216	+		BPHYT_RS12705	0.18	-0.5
2,898,217	-		BPHYT_RS12705	0.19	-0.3
2,898,217	-		BPHYT_RS12705	0.19	+0.9
2,898,359	-		BPHYT_RS12705	0.37	+0.2
2,898,359	-		BPHYT_RS12705	0.37	-0.1
2,898,360	+		BPHYT_RS12705	0.37	-0.1
2,898,361	-		BPHYT_RS12705	0.37	-0.2
2,898,558	+		BPHYT_RS12705	0.62	-0.1
2,898,558	+		BPHYT_RS12705	0.62	+0.3
2,898,558	+		BPHYT_RS12705	0.62	-0.8
2,898,570	-		BPHYT_RS12705	0.63	+0.5
2,898,570	-		BPHYT_RS12705	0.63	-0.9