Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05820

Experiment: 36hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05810 and BPHYT_RS05815 are separated by 35 nucleotidesBPHYT_RS05815 and BPHYT_RS05820 overlap by 4 nucleotidesBPHYT_RS05820 and BPHYT_RS05825 are separated by 32 nucleotidesBPHYT_RS05825 and BPHYT_RS05830 are separated by 165 nucleotidesBPHYT_RS05830 and BPHYT_RS05835 are separated by 32 nucleotides BPHYT_RS05810: BPHYT_RS05810 - hypothetical protein, at 1,323,255 to 1,324,721 _RS05810 BPHYT_RS05815: BPHYT_RS05815 - hypothetical protein, at 1,324,757 to 1,325,635 _RS05815 BPHYT_RS05820: BPHYT_RS05820 - hypothetical protein, at 1,325,632 to 1,327,530 _RS05820 BPHYT_RS05825: BPHYT_RS05825 - hypothetical protein, at 1,327,563 to 1,327,784 _RS05825 BPHYT_RS05830: BPHYT_RS05830 - hypothetical protein, at 1,327,950 to 1,328,408 _RS05830 BPHYT_RS05835: BPHYT_RS05835 - hypothetical protein, at 1,328,441 to 1,328,845 _RS05835 Position (kb) 1325 1326 1327 1328Strain fitness (log2 ratio) -2 -1 0 1 2at 1324.677 kb on - strandat 1324.729 kb on + strandat 1324.898 kb on - strand, within BPHYT_RS05815at 1325.166 kb on - strand, within BPHYT_RS05815at 1325.181 kb on + strand, within BPHYT_RS05815at 1325.256 kb on - strand, within BPHYT_RS05815at 1325.316 kb on - strand, within BPHYT_RS05815at 1325.685 kb on + strandat 1325.715 kb on + strandat 1325.716 kb on - strandat 1325.716 kb on - strandat 1325.920 kb on - strand, within BPHYT_RS05820at 1326.004 kb on + strand, within BPHYT_RS05820at 1326.220 kb on - strand, within BPHYT_RS05820at 1326.308 kb on + strand, within BPHYT_RS05820at 1326.308 kb on + strand, within BPHYT_RS05820at 1326.308 kb on + strand, within BPHYT_RS05820at 1326.309 kb on - strand, within BPHYT_RS05820at 1326.432 kb on - strand, within BPHYT_RS05820at 1326.559 kb on + strand, within BPHYT_RS05820at 1326.762 kb on + strand, within BPHYT_RS05820at 1326.853 kb on - strand, within BPHYT_RS05820at 1326.898 kb on + strand, within BPHYT_RS05820at 1326.931 kb on - strand, within BPHYT_RS05820at 1326.931 kb on - strand, within BPHYT_RS05820at 1326.951 kb on + strand, within BPHYT_RS05820at 1326.954 kb on + strand, within BPHYT_RS05820at 1326.955 kb on - strand, within BPHYT_RS05820at 1327.013 kb on - strand, within BPHYT_RS05820at 1327.020 kb on + strand, within BPHYT_RS05820at 1327.020 kb on + strand, within BPHYT_RS05820at 1327.021 kb on - strand, within BPHYT_RS05820at 1327.096 kb on - strand, within BPHYT_RS05820at 1327.147 kb on + strand, within BPHYT_RS05820at 1327.147 kb on + strand, within BPHYT_RS05820at 1327.183 kb on + strand, within BPHYT_RS05820at 1327.227 kb on - strand, within BPHYT_RS05820at 1327.314 kb on + strand, within BPHYT_RS05820at 1327.315 kb on - strand, within BPHYT_RS05820at 1327.368 kb on + strandat 1327.490 kb on - strandat 1327.519 kb on + strandat 1327.693 kb on + strand, within BPHYT_RS05825at 1327.694 kb on - strand, within BPHYT_RS05825at 1327.898 kb on + strandat 1328.009 kb on - strand, within BPHYT_RS05830at 1328.223 kb on + strand, within BPHYT_RS05830at 1328.245 kb on + strand, within BPHYT_RS05830at 1328.375 kb on - strandat 1328.471 kb on + strandat 1328.471 kb on + strandat 1328.471 kb on + strandat 1328.471 kb on + strandat 1328.472 kb on - strandat 1328.478 kb on - strandat 1328.489 kb on + strand, within BPHYT_RS05835

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1
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1,324,677 - -0.6
1,324,729 + +1.5
1,324,898 - BPHYT_RS05815 0.16 -0.8
1,325,166 - BPHYT_RS05815 0.47 -0.9
1,325,181 + BPHYT_RS05815 0.48 +0.1
1,325,256 - BPHYT_RS05815 0.57 -0.7
1,325,316 - BPHYT_RS05815 0.64 -0.7
1,325,685 + -1.5
1,325,715 + +1.0
1,325,716 - +0.2
1,325,716 - -0.3
1,325,920 - BPHYT_RS05820 0.15 -1.1
1,326,004 + BPHYT_RS05820 0.20 -0.4
1,326,220 - BPHYT_RS05820 0.31 -2.4
1,326,308 + BPHYT_RS05820 0.36 +0.1
1,326,308 + BPHYT_RS05820 0.36 +0.0
1,326,308 + BPHYT_RS05820 0.36 -0.6
1,326,309 - BPHYT_RS05820 0.36 -1.4
1,326,432 - BPHYT_RS05820 0.42 -0.7
1,326,559 + BPHYT_RS05820 0.49 -1.0
1,326,762 + BPHYT_RS05820 0.60 -0.5
1,326,853 - BPHYT_RS05820 0.64 -0.8
1,326,898 + BPHYT_RS05820 0.67 -0.3
1,326,931 - BPHYT_RS05820 0.68 -0.2
1,326,931 - BPHYT_RS05820 0.68 -0.5
1,326,951 + BPHYT_RS05820 0.69 +0.1
1,326,954 + BPHYT_RS05820 0.70 -0.6
1,326,955 - BPHYT_RS05820 0.70 +0.8
1,327,013 - BPHYT_RS05820 0.73 +0.1
1,327,020 + BPHYT_RS05820 0.73 -0.8
1,327,020 + BPHYT_RS05820 0.73 +0.2
1,327,021 - BPHYT_RS05820 0.73 -0.2
1,327,096 - BPHYT_RS05820 0.77 -2.0
1,327,147 + BPHYT_RS05820 0.80 +0.4
1,327,147 + BPHYT_RS05820 0.80 +1.5
1,327,183 + BPHYT_RS05820 0.82 +0.7
1,327,227 - BPHYT_RS05820 0.84 -1.5
1,327,314 + BPHYT_RS05820 0.89 +0.0
1,327,315 - BPHYT_RS05820 0.89 +0.3
1,327,368 + -1.2
1,327,490 - -0.4
1,327,519 + +0.1
1,327,693 + BPHYT_RS05825 0.59 -1.2
1,327,694 - BPHYT_RS05825 0.59 +0.6
1,327,898 + +0.2
1,328,009 - BPHYT_RS05830 0.13 -0.7
1,328,223 + BPHYT_RS05830 0.59 -0.9
1,328,245 + BPHYT_RS05830 0.64 -0.9
1,328,375 - -1.0
1,328,471 + +0.5
1,328,471 + -0.2
1,328,471 + -0.9
1,328,471 + +0.2
1,328,472 - -0.2
1,328,478 - +2.1
1,328,489 + BPHYT_RS05835 0.12 -0.5

Or see this region's nucleotide sequence