Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03450 and BPHYT_RS03455 are separated by 7 nucleotides BPHYT_RS03455 and BPHYT_RS03460 overlap by 8 nucleotides
BPHYT_RS03450: BPHYT_RS03450 - paraquat-inducible protein A, at 777,801 to 778,586
_RS03450
BPHYT_RS03455: BPHYT_RS03455 - paraquat-inducible protein A, at 778,594 to 779,256
_RS03455
BPHYT_RS03460: BPHYT_RS03460 - mammalian cell entry protein, at 779,249 to 780,907
_RS03460
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 777.642 kb on + strand at 777.642 kb on + strand at 777.642 kb on + strand at 777.643 kb on - strand at 777.725 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.729 kb on - strand at 777.729 kb on - strand at 777.729 kb on - strand at 777.739 kb on + strand at 777.753 kb on + strand at 777.754 kb on - strand at 777.754 kb on - strand at 777.839 kb on + strand at 777.909 kb on + strand, within BPHYT_RS03450 at 777.910 kb on - strand, within BPHYT_RS03450 at 777.911 kb on + strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.174 kb on - strand, within BPHYT_RS03450 at 778.247 kb on + strand, within BPHYT_RS03450 at 778.248 kb on - strand, within BPHYT_RS03450 at 778.273 kb on + strand, within BPHYT_RS03450 at 778.274 kb on - strand, within BPHYT_RS03450 at 778.600 kb on + strand at 778.601 kb on - strand at 778.601 kb on - strand at 778.775 kb on - strand, within BPHYT_RS03455 at 778.776 kb on + strand, within BPHYT_RS03455 at 778.777 kb on - strand, within BPHYT_RS03455 at 778.859 kb on - strand, within BPHYT_RS03455 at 779.201 kb on + strand at 779.201 kb on + strand at 779.202 kb on - strand at 779.202 kb on - strand at 779.224 kb on - strand at 779.254 kb on + strand at 779.510 kb on + strand, within BPHYT_RS03460 at 779.511 kb on - strand, within BPHYT_RS03460 at 779.677 kb on + strand, within BPHYT_RS03460 at 779.678 kb on - strand, within BPHYT_RS03460 at 779.699 kb on + strand, within BPHYT_RS03460 at 779.699 kb on + strand, within BPHYT_RS03460 at 779.699 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 777,642 + +1.5 777,642 + -0.2 777,642 + -0.5 777,643 - -0.9 777,725 + -1.4 777,728 + -0.4 777,728 + +0.6 777,728 + -1.0 777,728 + -0.9 777,729 - -1.1 777,729 - +0.2 777,729 - -0.6 777,739 + -0.4 777,753 + -1.2 777,754 - -1.8 777,754 - +1.4 777,839 + -0.5 777,909 + BPHYT_RS03450 0.14 +1.9 777,910 - BPHYT_RS03450 0.14 +0.5 777,911 + BPHYT_RS03450 0.14 +0.6 778,147 - BPHYT_RS03450 0.44 -1.4 778,147 - BPHYT_RS03450 0.44 -0.2 778,147 - BPHYT_RS03450 0.44 +0.4 778,147 - BPHYT_RS03450 0.44 +1.1 778,174 - BPHYT_RS03450 0.47 +1.1 778,247 + BPHYT_RS03450 0.57 +0.9 778,248 - BPHYT_RS03450 0.57 +0.1 778,273 + BPHYT_RS03450 0.60 +0.5 778,274 - BPHYT_RS03450 0.60 +0.0 778,600 + -1.9 778,601 - +0.1 778,601 - +3.5 778,775 - BPHYT_RS03455 0.27 +1.5 778,776 + BPHYT_RS03455 0.27 +0.5 778,777 - BPHYT_RS03455 0.28 +2.8 778,859 - BPHYT_RS03455 0.40 +0.7 779,201 + -0.2 779,201 + +0.8 779,202 - +0.4 779,202 - -0.1 779,224 - -0.3 779,254 + +0.4 779,510 + BPHYT_RS03460 0.16 -0.8 779,511 - BPHYT_RS03460 0.16 -0.9 779,677 + BPHYT_RS03460 0.26 -0.0 779,678 - BPHYT_RS03460 0.26 +0.0 779,699 + BPHYT_RS03460 0.27 -0.4 779,699 + BPHYT_RS03460 0.27 +0.7 779,699 + BPHYT_RS03460 0.27 -0.2 779,770 + BPHYT_RS03460 0.31 +2.0 779,770 + BPHYT_RS03460 0.31 -0.2 779,770 + BPHYT_RS03460 0.31 +0.6 779,770 + BPHYT_RS03460 0.31 +0.8
Or see this region's nucleotide sequence