Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03440 and BPHYT_RS03445 are separated by 8 nucleotides BPHYT_RS03445 and BPHYT_RS03450 are separated by 409 nucleotides BPHYT_RS03450 and BPHYT_RS03455 are separated by 7 nucleotides BPHYT_RS03455 and BPHYT_RS03460 overlap by 8 nucleotides
BPHYT_RS03440: BPHYT_RS03440 - polyisoprenoid-binding protein, at 776,259 to 776,822
_RS03440
BPHYT_RS03445: BPHYT_RS03445 - cytochrome B561, at 776,831 to 777,391
_RS03445
BPHYT_RS03450: BPHYT_RS03450 - paraquat-inducible protein A, at 777,801 to 778,586
_RS03450
BPHYT_RS03455: BPHYT_RS03455 - paraquat-inducible protein A, at 778,594 to 779,256
_RS03455
BPHYT_RS03460: BPHYT_RS03460 - mammalian cell entry protein, at 779,249 to 780,907
_RS03460
Position (kb) 777
778
779 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 776.801 kb on - strand at 776.806 kb on + strand at 776.934 kb on + strand, within BPHYT_RS03445 at 777.022 kb on - strand, within BPHYT_RS03445 at 777.022 kb on - strand, within BPHYT_RS03445 at 777.051 kb on + strand, within BPHYT_RS03445 at 777.051 kb on + strand, within BPHYT_RS03445 at 777.057 kb on + strand, within BPHYT_RS03445 at 777.090 kb on + strand, within BPHYT_RS03445 at 777.090 kb on + strand, within BPHYT_RS03445 at 777.241 kb on - strand, within BPHYT_RS03445 at 777.346 kb on + strand at 777.346 kb on + strand at 777.346 kb on + strand at 777.355 kb on - strand at 777.355 kb on - strand at 777.409 kb on + strand at 777.410 kb on - strand at 777.410 kb on - strand at 777.474 kb on + strand at 777.474 kb on + strand at 777.478 kb on - strand at 777.478 kb on - strand at 777.501 kb on + strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.545 kb on + strand at 777.642 kb on + strand at 777.642 kb on + strand at 777.642 kb on + strand at 777.643 kb on - strand at 777.725 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.729 kb on - strand at 777.729 kb on - strand at 777.729 kb on - strand at 777.739 kb on + strand at 777.753 kb on + strand at 777.754 kb on - strand at 777.754 kb on - strand at 777.839 kb on + strand at 777.909 kb on + strand, within BPHYT_RS03450 at 777.910 kb on - strand, within BPHYT_RS03450 at 777.911 kb on + strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.174 kb on - strand, within BPHYT_RS03450 at 778.247 kb on + strand, within BPHYT_RS03450 at 778.248 kb on - strand, within BPHYT_RS03450 at 778.273 kb on + strand, within BPHYT_RS03450 at 778.274 kb on - strand, within BPHYT_RS03450 at 778.600 kb on + strand at 778.601 kb on - strand at 778.601 kb on - strand at 778.775 kb on - strand, within BPHYT_RS03455 at 778.776 kb on + strand, within BPHYT_RS03455 at 778.777 kb on - strand, within BPHYT_RS03455 at 778.859 kb on - strand, within BPHYT_RS03455 at 779.201 kb on + strand at 779.201 kb on + strand at 779.202 kb on - strand at 779.202 kb on - strand at 779.224 kb on - strand at 779.254 kb on + strand at 779.510 kb on + strand, within BPHYT_RS03460 at 779.511 kb on - strand, within BPHYT_RS03460
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 776,801 - -0.5 776,806 + -0.4 776,934 + BPHYT_RS03445 0.18 -0.8 777,022 - BPHYT_RS03445 0.34 -1.1 777,022 - BPHYT_RS03445 0.34 +0.2 777,051 + BPHYT_RS03445 0.39 +0.8 777,051 + BPHYT_RS03445 0.39 -1.3 777,057 + BPHYT_RS03445 0.40 +0.2 777,090 + BPHYT_RS03445 0.46 -0.6 777,090 + BPHYT_RS03445 0.46 -1.4 777,241 - BPHYT_RS03445 0.73 -0.5 777,346 + +0.2 777,346 + +1.9 777,346 + -1.5 777,355 - +0.9 777,355 - +1.5 777,409 + +1.1 777,410 - +1.4 777,410 - -0.3 777,474 + -1.6 777,474 + -1.1 777,478 - -0.2 777,478 - -0.7 777,501 + +0.9 777,521 - +0.3 777,521 - -0.4 777,521 - +0.1 777,521 - +0.9 777,545 + -0.1 777,642 + +1.5 777,642 + -0.2 777,642 + -0.5 777,643 - -0.9 777,725 + -1.4 777,728 + -0.4 777,728 + +0.6 777,728 + -1.0 777,728 + -0.9 777,729 - -1.1 777,729 - +0.2 777,729 - -0.6 777,739 + -0.4 777,753 + -1.2 777,754 - -1.8 777,754 - +1.4 777,839 + -0.5 777,909 + BPHYT_RS03450 0.14 +1.9 777,910 - BPHYT_RS03450 0.14 +0.5 777,911 + BPHYT_RS03450 0.14 +0.6 778,147 - BPHYT_RS03450 0.44 -1.4 778,147 - BPHYT_RS03450 0.44 -0.2 778,147 - BPHYT_RS03450 0.44 +0.4 778,147 - BPHYT_RS03450 0.44 +1.1 778,174 - BPHYT_RS03450 0.47 +1.1 778,247 + BPHYT_RS03450 0.57 +0.9 778,248 - BPHYT_RS03450 0.57 +0.1 778,273 + BPHYT_RS03450 0.60 +0.5 778,274 - BPHYT_RS03450 0.60 +0.0 778,600 + -1.9 778,601 - +0.1 778,601 - +3.5 778,775 - BPHYT_RS03455 0.27 +1.5 778,776 + BPHYT_RS03455 0.27 +0.5 778,777 - BPHYT_RS03455 0.28 +2.8 778,859 - BPHYT_RS03455 0.40 +0.7 779,201 + -0.2 779,201 + +0.8 779,202 - +0.4 779,202 - -0.1 779,224 - -0.3 779,254 + +0.4 779,510 + BPHYT_RS03460 0.16 -0.8 779,511 - BPHYT_RS03460 0.16 -0.9
Or see this region's nucleotide sequence