Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01935 and BPHYT_RS01940 are separated by 129 nucleotides BPHYT_RS01940 and BPHYT_RS01945 are separated by 79 nucleotides BPHYT_RS01945 and BPHYT_RS01950 are separated by 216 nucleotides
BPHYT_RS01935: BPHYT_RS01935 - lipoprotein, at 439,977 to 440,609
_RS01935
BPHYT_RS01940: BPHYT_RS01940 - 16S rRNA methyltransferase, at 440,739 to 441,620
_RS01940
BPHYT_RS01945: BPHYT_RS01945 - hypothetical protein, at 441,700 to 442,122
_RS01945
BPHYT_RS01950: BPHYT_RS01950 - phosphoheptose isomerase, at 442,339 to 442,926
_RS01950
Position (kb) 440
441
442 Strain fitness (log2 ratio) -2
-1
0
1
2 at 439.741 kb on + strand at 440.006 kb on + strand at 440.007 kb on - strand at 440.007 kb on - strand at 440.007 kb on - strand at 440.091 kb on - strand, within BPHYT_RS01935 at 440.325 kb on + strand, within BPHYT_RS01935 at 440.325 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand at 440.357 kb on + strand, within BPHYT_RS01935 at 440.358 kb on - strand at 440.358 kb on - strand, within BPHYT_RS01935 at 440.358 kb on - strand, within BPHYT_RS01935 at 440.376 kb on + strand, within BPHYT_RS01935 at 440.377 kb on - strand, within BPHYT_RS01935 at 440.424 kb on - strand, within BPHYT_RS01935 at 440.443 kb on - strand, within BPHYT_RS01935 at 440.565 kb on - strand at 440.565 kb on - strand at 440.648 kb on - strand at 440.779 kb on + strand at 440.779 kb on + strand at 440.779 kb on + strand at 440.862 kb on + strand, within BPHYT_RS01940 at 440.919 kb on + strand, within BPHYT_RS01940 at 440.920 kb on - strand, within BPHYT_RS01940 at 441.006 kb on + strand, within BPHYT_RS01940 at 441.299 kb on + strand, within BPHYT_RS01940 at 441.343 kb on + strand, within BPHYT_RS01940 at 441.343 kb on + strand, within BPHYT_RS01940 at 441.344 kb on - strand, within BPHYT_RS01940 at 441.344 kb on - strand, within BPHYT_RS01940 at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.566 kb on - strand at 441.566 kb on - strand at 441.567 kb on + strand at 441.568 kb on - strand at 441.568 kb on - strand at 441.578 kb on + strand at 441.981 kb on + strand, within BPHYT_RS01945 at 441.981 kb on + strand, within BPHYT_RS01945 at 441.982 kb on - strand, within BPHYT_RS01945 at 441.982 kb on - strand, within BPHYT_RS01945 at 442.213 kb on + strand at 442.213 kb on + strand at 442.213 kb on + strand at 442.213 kb on + strand at 442.213 kb on + strand at 442.214 kb on - strand at 442.329 kb on + strand at 442.619 kb on - strand, within BPHYT_RS01950
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 439,741 + -0.8 440,006 + -0.3 440,007 - -1.4 440,007 - -0.1 440,007 - -1.0 440,091 - BPHYT_RS01935 0.18 -1.1 440,325 + BPHYT_RS01935 0.55 -0.7 440,325 + BPHYT_RS01935 0.55 -0.8 440,357 + BPHYT_RS01935 0.60 +0.3 440,357 + BPHYT_RS01935 0.60 +1.2 440,357 + BPHYT_RS01935 0.60 +0.1 440,357 + BPHYT_RS01935 0.60 -1.7 440,357 + BPHYT_RS01935 0.60 -0.4 440,357 + -0.5 440,357 + BPHYT_RS01935 0.60 -0.5 440,358 - -0.1 440,358 - BPHYT_RS01935 0.60 -1.8 440,358 - BPHYT_RS01935 0.60 -0.1 440,376 + BPHYT_RS01935 0.63 -1.1 440,377 - BPHYT_RS01935 0.63 -0.6 440,424 - BPHYT_RS01935 0.71 +0.1 440,443 - BPHYT_RS01935 0.74 -1.3 440,565 - -1.4 440,565 - +0.5 440,648 - -1.0 440,779 + -0.6 440,779 + -2.2 440,779 + -0.4 440,862 + BPHYT_RS01940 0.14 +0.6 440,919 + BPHYT_RS01940 0.20 -0.9 440,920 - BPHYT_RS01940 0.21 +0.1 441,006 + BPHYT_RS01940 0.30 +0.2 441,299 + BPHYT_RS01940 0.63 -0.0 441,343 + BPHYT_RS01940 0.68 +1.0 441,343 + BPHYT_RS01940 0.68 -0.5 441,344 - BPHYT_RS01940 0.69 +1.0 441,344 - BPHYT_RS01940 0.69 +0.5 441,565 + -0.8 441,565 + +1.0 441,565 + -2.6 441,565 + -2.7 441,565 + -1.3 441,565 + +1.6 441,566 - +0.1 441,566 - -0.2 441,567 + +2.1 441,568 - +0.0 441,568 - +1.0 441,578 + +0.5 441,981 + BPHYT_RS01945 0.66 -1.1 441,981 + BPHYT_RS01945 0.66 +0.6 441,982 - BPHYT_RS01945 0.67 +0.5 441,982 - BPHYT_RS01945 0.67 +0.8 442,213 + -0.0 442,213 + -2.2 442,213 + +2.6 442,213 + -0.1 442,213 + -0.7 442,214 - -1.3 442,329 + -0.2 442,619 - BPHYT_RS01950 0.48 -2.0
Or see this region's nucleotide sequence