Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00060 and BPHYT_RS00065 overlap by 4 nucleotides BPHYT_RS00065 and BPHYT_RS00070 are separated by 251 nucleotides
BPHYT_RS00060: BPHYT_RS00060 - hypothetical protein, at 16,121 to 18,958
_RS00060
BPHYT_RS00065: BPHYT_RS00065 - hypothetical protein, at 18,955 to 19,692
_RS00065
BPHYT_RS00070: BPHYT_RS00070 - hypothetical protein, at 19,944 to 21,122
_RS00070
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.018 kb on - strand, within BPHYT_RS00060 at 18.209 kb on + strand, within BPHYT_RS00060 at 18.319 kb on - strand, within BPHYT_RS00060 at 18.431 kb on + strand, within BPHYT_RS00060 at 18.439 kb on + strand, within BPHYT_RS00060 at 18.458 kb on - strand, within BPHYT_RS00060 at 18.489 kb on + strand, within BPHYT_RS00060 at 18.697 kb on - strand at 18.697 kb on - strand at 18.730 kb on + strand at 18.731 kb on - strand at 18.778 kb on - strand at 18.806 kb on + strand at 18.847 kb on + strand at 18.868 kb on + strand at 19.731 kb on - strand at 19.731 kb on - strand at 20.044 kb on + strand at 20.097 kb on - strand, within BPHYT_RS00070 at 20.355 kb on - strand, within BPHYT_RS00070 at 20.475 kb on - strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.594 kb on - strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.641 kb on - strand, within BPHYT_RS00070 at 20.641 kb on - strand, within BPHYT_RS00070 at 20.642 kb on + strand, within BPHYT_RS00070 at 20.643 kb on - strand, within BPHYT_RS00070 at 20.643 kb on - strand, within BPHYT_RS00070 at 20.644 kb on + strand, within BPHYT_RS00070 at 20.644 kb on + strand, within BPHYT_RS00070 at 20.645 kb on - strand, within BPHYT_RS00070 at 20.645 kb on - strand, within BPHYT_RS00070 at 20.682 kb on + strand, within BPHYT_RS00070 at 20.682 kb on + strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 18,018 - BPHYT_RS00060 0.67 +0.3 18,209 + BPHYT_RS00060 0.74 -0.1 18,319 - BPHYT_RS00060 0.77 -1.1 18,431 + BPHYT_RS00060 0.81 -0.3 18,439 + BPHYT_RS00060 0.82 +2.6 18,458 - BPHYT_RS00060 0.82 +0.0 18,489 + BPHYT_RS00060 0.83 +0.8 18,697 - +0.7 18,697 - -0.2 18,730 + +0.3 18,731 - +0.7 18,778 - +1.2 18,806 + -0.2 18,847 + -1.2 18,868 + -0.1 19,731 - +1.0 19,731 - -3.3 20,044 + -0.3 20,097 - BPHYT_RS00070 0.13 -0.6 20,355 - BPHYT_RS00070 0.35 -0.2 20,475 - BPHYT_RS00070 0.45 -0.4 20,478 + BPHYT_RS00070 0.45 +0.6 20,478 + BPHYT_RS00070 0.45 -0.6 20,478 + BPHYT_RS00070 0.45 +0.0 20,478 + BPHYT_RS00070 0.45 -0.7 20,594 - BPHYT_RS00070 0.55 -0.3 20,640 + BPHYT_RS00070 0.59 +0.4 20,640 + BPHYT_RS00070 0.59 +0.6 20,640 + BPHYT_RS00070 0.59 -0.2 20,641 - BPHYT_RS00070 0.59 -0.6 20,641 - BPHYT_RS00070 0.59 +0.6 20,642 + BPHYT_RS00070 0.59 +0.7 20,643 - BPHYT_RS00070 0.59 -0.3 20,643 - BPHYT_RS00070 0.59 +0.0 20,644 + BPHYT_RS00070 0.59 -0.8 20,644 + BPHYT_RS00070 0.59 -0.4 20,645 - BPHYT_RS00070 0.59 +1.1 20,645 - BPHYT_RS00070 0.59 +0.3 20,682 + BPHYT_RS00070 0.63 -0.3 20,682 + BPHYT_RS00070 0.63 -0.5 20,683 - BPHYT_RS00070 0.63 +0.2 20,683 - BPHYT_RS00070 0.63 +0.3 20,683 - BPHYT_RS00070 0.63 -2.0 20,683 - BPHYT_RS00070 0.63 +0.1 20,683 - BPHYT_RS00070 0.63 -0.7 20,683 - BPHYT_RS00070 0.63 -0.1 20,683 - BPHYT_RS00070 0.63 -0.2
Or see this region's nucleotide sequence