Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31035

Experiment: 36hr PHYTO1 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS31030 and BPHYT_RS31035 are separated by 57 nucleotidesBPHYT_RS31035 and BPHYT_RS31040 are separated by 2 nucleotides BPHYT_RS31030: BPHYT_RS31030 - tyrosine protein kinase, at 2,515,527 to 2,517,752 _RS31030 BPHYT_RS31035: BPHYT_RS31035 - protein-tyrosine-phosphatase, at 2,517,810 to 2,518,247 _RS31035 BPHYT_RS31040: BPHYT_RS31040 - sugar transporter, at 2,518,250 to 2,519,407 _RS31040 Position (kb) 2517 2518 2519Strain fitness (log2 ratio) -2 -1 0 1at 2516.945 kb on - strand, within BPHYT_RS31030at 2517.729 kb on - strandat 2519.131 kb on + strand, within BPHYT_RS31040at 2519.132 kb on - strand, within BPHYT_RS31040at 2519.191 kb on - strand, within BPHYT_RS31040

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 10
remove
2,516,945 - BPHYT_RS31030 0.64 -0.4
2,517,729 - -1.2
2,519,131 + BPHYT_RS31040 0.76 -1.3
2,519,132 - BPHYT_RS31040 0.76 -1.2
2,519,191 - BPHYT_RS31040 0.81 -1.8

Or see this region's nucleotide sequence