Experiment: 36hr PHYTO1 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22480 and BPHYT_RS22485 are separated by 16 nucleotides BPHYT_RS22485 and BPHYT_RS22490 are separated by 233 nucleotides
BPHYT_RS22480: BPHYT_RS22480 - cytochrome C551, at 602,492 to 603,397
_RS22480
BPHYT_RS22485: BPHYT_RS22485 - NADP-dependent aryl-alcohol dehydrogenase, at 603,414 to 604,394
_RS22485
BPHYT_RS22490: BPHYT_RS22490 - hypothetical protein, at 604,628 to 605,701
_RS22490
Position (kb) 603
604
605 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 602.777 kb on + strand, within BPHYT_RS22480 at 602.778 kb on - strand, within BPHYT_RS22480 at 602.819 kb on + strand, within BPHYT_RS22480 at 603.229 kb on + strand, within BPHYT_RS22480 at 603.445 kb on + strand at 603.821 kb on - strand, within BPHYT_RS22485 at 603.822 kb on + strand, within BPHYT_RS22485 at 603.823 kb on - strand, within BPHYT_RS22485 at 603.911 kb on - strand, within BPHYT_RS22485 at 603.932 kb on - strand, within BPHYT_RS22485 at 603.952 kb on - strand, within BPHYT_RS22485 at 604.387 kb on + strand at 604.561 kb on + strand at 604.564 kb on - strand at 604.564 kb on - strand at 604.893 kb on + strand, within BPHYT_RS22490 at 604.894 kb on - strand, within BPHYT_RS22490 at 604.894 kb on - strand, within BPHYT_RS22490 at 604.986 kb on - strand, within BPHYT_RS22490 at 605.285 kb on + strand, within BPHYT_RS22490 at 605.285 kb on + strand, within BPHYT_RS22490 at 605.286 kb on - strand, within BPHYT_RS22490
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 10 remove 602,777 + BPHYT_RS22480 0.31 -0.4 602,778 - BPHYT_RS22480 0.32 +0.1 602,819 + BPHYT_RS22480 0.36 +0.3 603,229 + BPHYT_RS22480 0.81 -0.4 603,445 + +0.6 603,821 - BPHYT_RS22485 0.41 +0.2 603,822 + BPHYT_RS22485 0.42 +3.1 603,823 - BPHYT_RS22485 0.42 -0.3 603,911 - BPHYT_RS22485 0.51 +0.8 603,932 - BPHYT_RS22485 0.53 +1.4 603,952 - BPHYT_RS22485 0.55 +1.1 604,387 + -2.1 604,561 + -0.5 604,564 - -0.2 604,564 - -0.8 604,893 + BPHYT_RS22490 0.25 +0.1 604,894 - BPHYT_RS22490 0.25 -1.4 604,894 - BPHYT_RS22490 0.25 +0.4 604,986 - BPHYT_RS22490 0.33 -0.2 605,285 + BPHYT_RS22490 0.61 +0.5 605,285 + BPHYT_RS22490 0.61 +1.3 605,286 - BPHYT_RS22490 0.61 -0.6
Or see this region's nucleotide sequence