Experiment: 36hr PHYTO1 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03440 and BPHYT_RS03445 are separated by 8 nucleotides BPHYT_RS03445 and BPHYT_RS03450 are separated by 409 nucleotides BPHYT_RS03450 and BPHYT_RS03455 are separated by 7 nucleotides BPHYT_RS03455 and BPHYT_RS03460 overlap by 8 nucleotides
BPHYT_RS03440: BPHYT_RS03440 - polyisoprenoid-binding protein, at 776,259 to 776,822
_RS03440
BPHYT_RS03445: BPHYT_RS03445 - cytochrome B561, at 776,831 to 777,391
_RS03445
BPHYT_RS03450: BPHYT_RS03450 - paraquat-inducible protein A, at 777,801 to 778,586
_RS03450
BPHYT_RS03455: BPHYT_RS03455 - paraquat-inducible protein A, at 778,594 to 779,256
_RS03455
BPHYT_RS03460: BPHYT_RS03460 - mammalian cell entry protein, at 779,249 to 780,907
_RS03460
Position (kb) 777
778
779 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 776.801 kb on - strand at 776.806 kb on + strand at 776.934 kb on + strand, within BPHYT_RS03445 at 777.022 kb on - strand, within BPHYT_RS03445 at 777.022 kb on - strand, within BPHYT_RS03445 at 777.051 kb on + strand, within BPHYT_RS03445 at 777.051 kb on + strand, within BPHYT_RS03445 at 777.057 kb on + strand, within BPHYT_RS03445 at 777.090 kb on + strand, within BPHYT_RS03445 at 777.090 kb on + strand, within BPHYT_RS03445 at 777.241 kb on - strand, within BPHYT_RS03445 at 777.346 kb on + strand at 777.346 kb on + strand at 777.346 kb on + strand at 777.355 kb on - strand at 777.355 kb on - strand at 777.409 kb on + strand at 777.410 kb on - strand at 777.410 kb on - strand at 777.474 kb on + strand at 777.474 kb on + strand at 777.478 kb on - strand at 777.478 kb on - strand at 777.501 kb on + strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.545 kb on + strand at 777.642 kb on + strand at 777.642 kb on + strand at 777.642 kb on + strand at 777.643 kb on - strand at 777.725 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.729 kb on - strand at 777.729 kb on - strand at 777.729 kb on - strand at 777.739 kb on + strand at 777.753 kb on + strand at 777.754 kb on - strand at 777.754 kb on - strand at 777.839 kb on + strand at 777.909 kb on + strand, within BPHYT_RS03450 at 777.910 kb on - strand, within BPHYT_RS03450 at 777.911 kb on + strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.174 kb on - strand, within BPHYT_RS03450 at 778.247 kb on + strand, within BPHYT_RS03450 at 778.248 kb on - strand, within BPHYT_RS03450 at 778.273 kb on + strand, within BPHYT_RS03450 at 778.274 kb on - strand, within BPHYT_RS03450 at 778.600 kb on + strand at 778.601 kb on - strand at 778.601 kb on - strand at 778.775 kb on - strand, within BPHYT_RS03455 at 778.776 kb on + strand, within BPHYT_RS03455 at 778.777 kb on - strand, within BPHYT_RS03455 at 778.859 kb on - strand, within BPHYT_RS03455 at 779.201 kb on + strand at 779.201 kb on + strand at 779.202 kb on - strand at 779.202 kb on - strand at 779.224 kb on - strand at 779.254 kb on + strand at 779.510 kb on + strand, within BPHYT_RS03460 at 779.511 kb on - strand, within BPHYT_RS03460
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 10 remove 776,801 - +0.4 776,806 + -1.9 776,934 + BPHYT_RS03445 0.18 -0.6 777,022 - BPHYT_RS03445 0.34 -1.4 777,022 - BPHYT_RS03445 0.34 -0.1 777,051 + BPHYT_RS03445 0.39 -0.9 777,051 + BPHYT_RS03445 0.39 -1.0 777,057 + BPHYT_RS03445 0.40 +0.3 777,090 + BPHYT_RS03445 0.46 +1.5 777,090 + BPHYT_RS03445 0.46 -1.7 777,241 - BPHYT_RS03445 0.73 -0.7 777,346 + -0.8 777,346 + +0.6 777,346 + -2.4 777,355 - -0.9 777,355 - -0.8 777,409 + +1.2 777,410 - +0.5 777,410 - +0.3 777,474 + -0.4 777,474 + -0.5 777,478 - -0.5 777,478 - -0.3 777,501 + +0.2 777,521 - +0.7 777,521 - +0.3 777,521 - -0.2 777,521 - +0.6 777,545 + +0.6 777,642 + -0.4 777,642 + -1.3 777,642 + +0.4 777,643 - -0.2 777,725 + -2.0 777,728 + +1.3 777,728 + -1.0 777,728 + +0.4 777,728 + -0.6 777,729 - +0.9 777,729 - +0.7 777,729 - +0.1 777,739 + -0.6 777,753 + +0.8 777,754 - -1.1 777,754 - -1.2 777,839 + -0.0 777,909 + BPHYT_RS03450 0.14 -0.4 777,910 - BPHYT_RS03450 0.14 +1.7 777,911 + BPHYT_RS03450 0.14 +1.8 778,147 - BPHYT_RS03450 0.44 +0.4 778,147 - BPHYT_RS03450 0.44 +0.8 778,147 - BPHYT_RS03450 0.44 +0.8 778,147 - BPHYT_RS03450 0.44 +1.5 778,174 - BPHYT_RS03450 0.47 +1.1 778,247 + BPHYT_RS03450 0.57 +1.3 778,248 - BPHYT_RS03450 0.57 +0.2 778,273 + BPHYT_RS03450 0.60 +0.2 778,274 - BPHYT_RS03450 0.60 +1.1 778,600 + -1.2 778,601 - +0.8 778,601 - +3.8 778,775 - BPHYT_RS03455 0.27 +2.2 778,776 + BPHYT_RS03455 0.27 +1.8 778,777 - BPHYT_RS03455 0.28 +1.2 778,859 - BPHYT_RS03455 0.40 +1.0 779,201 + +0.1 779,201 + +0.6 779,202 - +2.1 779,202 - +0.4 779,224 - +0.2 779,254 + +0.8 779,510 + BPHYT_RS03460 0.16 +1.4 779,511 - BPHYT_RS03460 0.16 -0.6
Or see this region's nucleotide sequence