Experiment: 36hr Phyto Lib Only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36330 and BPHYT_RS36335 are separated by 155 nucleotides BPHYT_RS36335 and BPHYT_RS36340 are separated by 629 nucleotides
BPHYT_RS36330: BPHYT_RS36330 - type IV secretory protein VirB8, at 78,670 to 79,569
_RS36330
BPHYT_RS36335: BPHYT_RS36335 - hypothetical protein, at 79,725 to 80,474
_RS36335
BPHYT_RS36340: BPHYT_RS36340 - hypothetical protein, at 81,104 to 81,769
_RS36340
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1 at 78.761 kb on + strand, within BPHYT_RS36330 at 78.762 kb on - strand, within BPHYT_RS36330 at 78.886 kb on + strand, within BPHYT_RS36330 at 78.887 kb on - strand, within BPHYT_RS36330 at 78.889 kb on + strand, within BPHYT_RS36330 at 78.889 kb on + strand, within BPHYT_RS36330 at 78.889 kb on + strand, within BPHYT_RS36330 at 78.890 kb on - strand, within BPHYT_RS36330 at 78.964 kb on + strand, within BPHYT_RS36330 at 79.012 kb on + strand, within BPHYT_RS36330 at 79.023 kb on - strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.066 kb on + strand, within BPHYT_RS36330 at 79.067 kb on - strand, within BPHYT_RS36330 at 79.145 kb on - strand, within BPHYT_RS36330 at 79.207 kb on + strand, within BPHYT_RS36330 at 79.208 kb on - strand, within BPHYT_RS36330 at 79.442 kb on + strand, within BPHYT_RS36330 at 79.459 kb on + strand, within BPHYT_RS36330 at 79.459 kb on + strand, within BPHYT_RS36330 at 79.493 kb on - strand at 79.528 kb on - strand at 79.528 kb on - strand at 79.528 kb on - strand at 79.963 kb on - strand, within BPHYT_RS36335 at 79.992 kb on + strand, within BPHYT_RS36335 at 79.992 kb on + strand, within BPHYT_RS36335 at 79.992 kb on + strand, within BPHYT_RS36335 at 79.993 kb on - strand, within BPHYT_RS36335 at 80.149 kb on - strand, within BPHYT_RS36335 at 80.155 kb on - strand, within BPHYT_RS36335 at 80.155 kb on - strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.251 kb on - strand, within BPHYT_RS36335 at 80.573 kb on + strand at 80.879 kb on - strand at 80.995 kb on + strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.150 kb on - strand at 81.312 kb on + strand, within BPHYT_RS36340
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib Only remove 78,761 + BPHYT_RS36330 0.10 +0.9 78,762 - BPHYT_RS36330 0.10 -0.3 78,886 + BPHYT_RS36330 0.24 +0.1 78,887 - BPHYT_RS36330 0.24 +0.3 78,889 + BPHYT_RS36330 0.24 -0.5 78,889 + BPHYT_RS36330 0.24 +1.1 78,889 + BPHYT_RS36330 0.24 -0.8 78,890 - BPHYT_RS36330 0.24 -0.7 78,964 + BPHYT_RS36330 0.33 -0.5 79,012 + BPHYT_RS36330 0.38 -1.2 79,023 - BPHYT_RS36330 0.39 -0.1 79,066 + BPHYT_RS36330 0.44 +0.4 79,066 + BPHYT_RS36330 0.44 -0.6 79,066 + BPHYT_RS36330 0.44 +0.4 79,066 + BPHYT_RS36330 0.44 -0.9 79,067 - BPHYT_RS36330 0.44 -0.2 79,145 - BPHYT_RS36330 0.53 +0.5 79,207 + BPHYT_RS36330 0.60 +0.6 79,208 - BPHYT_RS36330 0.60 +0.1 79,442 + BPHYT_RS36330 0.86 +1.1 79,459 + BPHYT_RS36330 0.88 -0.0 79,459 + BPHYT_RS36330 0.88 +0.5 79,493 - -0.2 79,528 - -0.6 79,528 - -0.5 79,528 - -0.2 79,963 - BPHYT_RS36335 0.32 -0.4 79,992 + BPHYT_RS36335 0.36 +0.7 79,992 + BPHYT_RS36335 0.36 +0.0 79,992 + BPHYT_RS36335 0.36 -1.3 79,993 - BPHYT_RS36335 0.36 -0.5 80,149 - BPHYT_RS36335 0.57 -1.7 80,155 - BPHYT_RS36335 0.57 -0.4 80,155 - BPHYT_RS36335 0.57 -1.8 80,248 + BPHYT_RS36335 0.70 +0.1 80,248 + BPHYT_RS36335 0.70 -0.8 80,248 + BPHYT_RS36335 0.70 +0.6 80,249 - BPHYT_RS36335 0.70 -0.1 80,249 - BPHYT_RS36335 0.70 +0.1 80,249 - BPHYT_RS36335 0.70 -0.1 80,251 - BPHYT_RS36335 0.70 -1.3 80,573 + +0.0 80,879 - -1.1 80,995 + +0.9 80,996 - +0.9 80,996 - -0.5 80,996 - -0.1 80,996 - -1.6 80,996 - -0.1 81,149 + +0.1 81,149 + -0.0 81,149 + -1.0 81,149 + -0.7 81,149 + -0.2 81,150 - +0.1 81,312 + BPHYT_RS36340 0.31 +0.2
Or see this region's nucleotide sequence