Experiment: 36hr Phyto Lib Only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28665 and BPHYT_RS28670 are separated by 164 nucleotides BPHYT_RS28670 and BPHYT_RS28675 are separated by 77 nucleotides BPHYT_RS28675 and BPHYT_RS28680 are separated by 120 nucleotides
BPHYT_RS28665: BPHYT_RS28665 - IclR family transcriptional regulator, at 1,984,457 to 1,985,272
_RS28665
BPHYT_RS28670: BPHYT_RS28670 - MFS transporter, at 1,985,437 to 1,986,801
_RS28670
BPHYT_RS28675: BPHYT_RS28675 - hypothetical protein, at 1,986,879 to 1,987,544
_RS28675
BPHYT_RS28680: BPHYT_RS28680 - porin, at 1,987,665 to 1,988,180
_RS28680
Position (kb) 1985
1986
1987 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1984.467 kb on + strand at 1984.468 kb on - strand at 1985.225 kb on - strand at 1985.767 kb on + strand, within BPHYT_RS28670 at 1985.871 kb on - strand, within BPHYT_RS28670 at 1986.160 kb on + strand, within BPHYT_RS28670 at 1986.161 kb on - strand, within BPHYT_RS28670 at 1986.242 kb on - strand, within BPHYT_RS28670 at 1986.678 kb on + strand at 1986.945 kb on + strand at 1987.060 kb on - strand, within BPHYT_RS28675 at 1987.181 kb on + strand, within BPHYT_RS28675 at 1987.181 kb on + strand, within BPHYT_RS28675 at 1987.772 kb on - strand, within BPHYT_RS28680
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib Only remove 1,984,467 + +1.1 1,984,468 - -1.7 1,985,225 - +0.6 1,985,767 + BPHYT_RS28670 0.24 +3.4 1,985,871 - BPHYT_RS28670 0.32 +0.9 1,986,160 + BPHYT_RS28670 0.53 -0.3 1,986,161 - BPHYT_RS28670 0.53 +0.6 1,986,242 - BPHYT_RS28670 0.59 +0.2 1,986,678 + +0.5 1,986,945 + +0.6 1,987,060 - BPHYT_RS28675 0.27 -1.1 1,987,181 + BPHYT_RS28675 0.45 +4.2 1,987,181 + BPHYT_RS28675 0.45 -1.6 1,987,772 - BPHYT_RS28680 0.21 -0.8
Or see this region's nucleotide sequence