Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26125

Experiment: 36hr Phyto Lib Only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26120 and BPHYT_RS26125 are separated by 97 nucleotidesBPHYT_RS26125 and BPHYT_RS26130 are separated by 96 nucleotides BPHYT_RS26120: BPHYT_RS26120 - spermidine/putrescine ABC transporter ATPase, at 1,435,391 to 1,436,449 _RS26120 BPHYT_RS26125: BPHYT_RS26125 - ABC transporter substrate-binding protein, at 1,436,547 to 1,437,842 _RS26125 BPHYT_RS26130: BPHYT_RS26130 - ABC transporter permease, at 1,437,939 to 1,438,853 _RS26130 Position (kb) 1436 1437 1438Strain fitness (log2 ratio) -2 -1 0 1at 1436.772 kb on + strand, within BPHYT_RS26125at 1436.851 kb on - strand, within BPHYT_RS26125at 1437.246 kb on + strand, within BPHYT_RS26125at 1437.472 kb on - strand, within BPHYT_RS26125at 1437.579 kb on + strand, within BPHYT_RS26125at 1437.597 kb on + strand, within BPHYT_RS26125at 1437.804 kb on + strandat 1437.914 kb on + strandat 1438.264 kb on - strand, within BPHYT_RS26130at 1438.690 kb on + strand, within BPHYT_RS26130

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr Phyto Lib Only
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1,436,772 + BPHYT_RS26125 0.17 -2.5
1,436,851 - BPHYT_RS26125 0.23 -0.5
1,437,246 + BPHYT_RS26125 0.54 +1.1
1,437,472 - BPHYT_RS26125 0.71 -0.8
1,437,579 + BPHYT_RS26125 0.80 -1.1
1,437,597 + BPHYT_RS26125 0.81 -0.5
1,437,804 + +1.3
1,437,914 + +0.4
1,438,264 - BPHYT_RS26130 0.36 -0.2
1,438,690 + BPHYT_RS26130 0.82 -0.2

Or see this region's nucleotide sequence