Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27730

Experiment: 24hr Phyto Lib Only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27715 and BPHYT_RS27720 overlap by 2 nucleotidesBPHYT_RS27720 and BPHYT_RS27725 are separated by 0 nucleotidesBPHYT_RS27725 and BPHYT_RS27730 are separated by 46 nucleotidesBPHYT_RS27730 and BPHYT_RS27735 are separated by 171 nucleotides BPHYT_RS27715: BPHYT_RS27715 - UspA domain-containing protein, at 1,783,117 to 1,783,593 _RS27715 BPHYT_RS27720: BPHYT_RS27720 - hypothetical protein, at 1,783,592 to 1,783,831 _RS27720 BPHYT_RS27725: BPHYT_RS27725 - hypothetical protein, at 1,783,832 to 1,784,050 _RS27725 BPHYT_RS27730: BPHYT_RS27730 - LuxR family transcriptional regulator, at 1,784,097 to 1,784,744 _RS27730 BPHYT_RS27735: BPHYT_RS27735 - nitroreductase, at 1,784,916 to 1,785,947 _RS27735 Position (kb) 1784 1785Strain fitness (log2 ratio) -2 -1 0 1 2at 1783.417 kb on - strand, within BPHYT_RS27715at 1783.679 kb on - strand, within BPHYT_RS27720at 1783.943 kb on - strand, within BPHYT_RS27725at 1784.799 kb on + strandat 1784.888 kb on + strandat 1785.204 kb on + strand, within BPHYT_RS27735at 1785.205 kb on - strand, within BPHYT_RS27735at 1785.616 kb on + strand, within BPHYT_RS27735at 1785.663 kb on - strand, within BPHYT_RS27735at 1785.663 kb on - strand, within BPHYT_RS27735

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only
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1,783,417 - BPHYT_RS27715 0.63 -0.2
1,783,679 - BPHYT_RS27720 0.36 -0.8
1,783,943 - BPHYT_RS27725 0.51 +1.8
1,784,799 + -1.8
1,784,888 + +0.9
1,785,204 + BPHYT_RS27735 0.28 -0.6
1,785,205 - BPHYT_RS27735 0.28 +0.7
1,785,616 + BPHYT_RS27735 0.68 -0.4
1,785,663 - BPHYT_RS27735 0.72 +2.4
1,785,663 - BPHYT_RS27735 0.72 +0.8

Or see this region's nucleotide sequence