Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27720

Experiment: 24hr Phyto Lib Only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27710 and BPHYT_RS27715 are separated by 173 nucleotidesBPHYT_RS27715 and BPHYT_RS27720 overlap by 2 nucleotidesBPHYT_RS27720 and BPHYT_RS27725 are separated by 0 nucleotidesBPHYT_RS27725 and BPHYT_RS27730 are separated by 46 nucleotides BPHYT_RS27710: BPHYT_RS27710 - universal stress protein A, at 1,782,113 to 1,782,943 _RS27710 BPHYT_RS27715: BPHYT_RS27715 - UspA domain-containing protein, at 1,783,117 to 1,783,593 _RS27715 BPHYT_RS27720: BPHYT_RS27720 - hypothetical protein, at 1,783,592 to 1,783,831 _RS27720 BPHYT_RS27725: BPHYT_RS27725 - hypothetical protein, at 1,783,832 to 1,784,050 _RS27725 BPHYT_RS27730: BPHYT_RS27730 - LuxR family transcriptional regulator, at 1,784,097 to 1,784,744 _RS27730 Position (kb) 1783 1784Strain fitness (log2 ratio) -2 -1 0 1 2at 1783.014 kb on - strandat 1783.417 kb on - strand, within BPHYT_RS27715at 1783.679 kb on - strand, within BPHYT_RS27720at 1783.943 kb on - strand, within BPHYT_RS27725at 1784.799 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only
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1,783,014 - -0.6
1,783,417 - BPHYT_RS27715 0.63 -0.2
1,783,679 - BPHYT_RS27720 0.36 -0.8
1,783,943 - BPHYT_RS27725 0.51 +1.8
1,784,799 + -1.8

Or see this region's nucleotide sequence