Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25980

Experiment: 24hr Phyto Lib Only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25975 and BPHYT_RS25980 overlap by 4 nucleotidesBPHYT_RS25980 and BPHYT_RS25985 are separated by 11 nucleotidesBPHYT_RS25985 and BPHYT_RS25990 are separated by 30 nucleotides BPHYT_RS25975: BPHYT_RS25975 - urea carboxylase, at 1,403,003 to 1,406,614 _RS25975 BPHYT_RS25980: BPHYT_RS25980 - urea carboxylase, at 1,406,611 to 1,407,267 _RS25980 BPHYT_RS25985: BPHYT_RS25985 - urea carboxylase, at 1,407,279 to 1,408,034 _RS25985 BPHYT_RS25990: BPHYT_RS25990 - hypothetical protein, at 1,408,065 to 1,408,265 _RS25990 Position (kb) 1406 1407 1408Strain fitness (log2 ratio) -1 0 1at 1406.022 kb on + strand, within BPHYT_RS25975at 1406.905 kb on - strand, within BPHYT_RS25980at 1408.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only
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1,406,022 + BPHYT_RS25975 0.84 -0.9
1,406,905 - BPHYT_RS25980 0.45 +1.4
1,408,061 - -0.1

Or see this region's nucleotide sequence