Experiment: 24hr Phyto Lib Only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25035 and BPHYT_RS25040 are separated by 197 nucleotides BPHYT_RS25040 and BPHYT_RS25045 are separated by 133 nucleotides BPHYT_RS25045 and BPHYT_RS25050 are separated by 113 nucleotides
BPHYT_RS25035: BPHYT_RS25035 - long-chain fatty acid--CoA ligase, at 1,186,556 to 1,188,253
_RS25035
BPHYT_RS25040: BPHYT_RS25040 - hypothetical protein, at 1,188,451 to 1,188,741
_RS25040
BPHYT_RS25045: BPHYT_RS25045 - LysR family transcriptional regulator, at 1,188,875 to 1,189,786
_RS25045
BPHYT_RS25050: BPHYT_RS25050 - 3-isopropylmalate dehydrogenase, at 1,189,900 to 1,191,030
_RS25050
Position (kb) 1188
1189
1190 Strain fitness (log2 ratio) -1
0
1 at 1188.330 kb on + strand at 1188.331 kb on - strand at 1188.960 kb on + strand at 1189.024 kb on - strand, within BPHYT_RS25045 at 1189.024 kb on - strand, within BPHYT_RS25045 at 1189.585 kb on - strand, within BPHYT_RS25045 at 1189.585 kb on - strand, within BPHYT_RS25045 at 1189.796 kb on + strand at 1189.831 kb on - strand at 1189.860 kb on + strand at 1189.861 kb on - strand at 1189.909 kb on + strand at 1190.312 kb on - strand, within BPHYT_RS25050
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only remove 1,188,330 + +0.1 1,188,331 - -0.3 1,188,960 + -0.3 1,189,024 - BPHYT_RS25045 0.16 -1.0 1,189,024 - BPHYT_RS25045 0.16 -0.3 1,189,585 - BPHYT_RS25045 0.78 -1.3 1,189,585 - BPHYT_RS25045 0.78 -0.1 1,189,796 + -0.9 1,189,831 - +0.4 1,189,860 + +1.3 1,189,861 - +0.5 1,189,909 + -0.7 1,190,312 - BPHYT_RS25050 0.36 +0.1
Or see this region's nucleotide sequence