Experiment: 24hr Phyto Lib Only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22665 and BPHYT_RS22670 are separated by 157 nucleotides BPHYT_RS22670 and BPHYT_RS22675 are separated by 190 nucleotides BPHYT_RS22675 and BPHYT_RS22680 are separated by 318 nucleotides BPHYT_RS22680 and BPHYT_RS22685 overlap by 4 nucleotides
BPHYT_RS22665: BPHYT_RS22665 - hypothetical protein, at 641,360 to 641,620
_RS22665
BPHYT_RS22670: BPHYT_RS22670 - hypothetical protein, at 641,778 to 642,110
_RS22670
BPHYT_RS22675: BPHYT_RS22675 - 4-hydroxyphenylpyruvate dioxygenase, at 642,301 to 644,184
_RS22675
BPHYT_RS22680: BPHYT_RS22680 - 3-dehydroquinate dehydratase, at 644,503 to 644,958
_RS22680
BPHYT_RS22685: BPHYT_RS22685 - shikimate 5-dehydrogenase, at 644,955 to 645,869
_RS22685
Position (kb) 642
643
644
645 Strain fitness (log2 ratio) -2
-1
0
1
2 at 641.313 kb on + strand at 641.362 kb on - strand at 641.683 kb on + strand at 641.683 kb on + strand at 641.683 kb on + strand at 641.684 kb on - strand at 641.761 kb on + strand at 641.851 kb on + strand, within BPHYT_RS22670 at 642.110 kb on + strand at 642.111 kb on - strand at 642.203 kb on + strand at 642.423 kb on - strand at 642.462 kb on - strand at 642.472 kb on - strand at 642.533 kb on + strand, within BPHYT_RS22675 at 642.534 kb on - strand, within BPHYT_RS22675 at 642.536 kb on + strand, within BPHYT_RS22675 at 642.644 kb on + strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.648 kb on + strand, within BPHYT_RS22675 at 642.648 kb on + strand, within BPHYT_RS22675 at 642.648 kb on + strand, within BPHYT_RS22675 at 642.649 kb on - strand, within BPHYT_RS22675 at 642.753 kb on - strand, within BPHYT_RS22675 at 642.793 kb on + strand, within BPHYT_RS22675 at 643.491 kb on - strand, within BPHYT_RS22675 at 644.575 kb on + strand, within BPHYT_RS22680 at 644.575 kb on + strand, within BPHYT_RS22680 at 644.748 kb on + strand, within BPHYT_RS22680 at 644.809 kb on - strand, within BPHYT_RS22680 at 644.851 kb on + strand, within BPHYT_RS22680 at 644.902 kb on + strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.906 kb on + strand, within BPHYT_RS22680 at 644.907 kb on - strand, within BPHYT_RS22680 at 644.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only remove 641,313 + -0.3 641,362 - -0.3 641,683 + -1.1 641,683 + -0.2 641,683 + -1.0 641,684 - +0.6 641,761 + +0.7 641,851 + BPHYT_RS22670 0.22 +0.2 642,110 + -1.1 642,111 - -1.1 642,203 + +0.8 642,423 - -1.1 642,462 - -1.3 642,472 - -0.5 642,533 + BPHYT_RS22675 0.12 +0.0 642,534 - BPHYT_RS22675 0.12 +0.3 642,536 + BPHYT_RS22675 0.12 +2.1 642,644 + BPHYT_RS22675 0.18 +0.5 642,645 - BPHYT_RS22675 0.18 +0.9 642,645 - BPHYT_RS22675 0.18 +0.2 642,645 - BPHYT_RS22675 0.18 +0.9 642,645 - BPHYT_RS22675 0.18 +0.5 642,648 + BPHYT_RS22675 0.18 +0.0 642,648 + BPHYT_RS22675 0.18 -0.7 642,648 + BPHYT_RS22675 0.18 +0.8 642,649 - BPHYT_RS22675 0.18 +0.5 642,753 - BPHYT_RS22675 0.24 +0.3 642,793 + BPHYT_RS22675 0.26 +0.2 643,491 - BPHYT_RS22675 0.63 +0.7 644,575 + BPHYT_RS22680 0.16 +1.1 644,575 + BPHYT_RS22680 0.16 +0.3 644,748 + BPHYT_RS22680 0.54 +0.9 644,809 - BPHYT_RS22680 0.67 -0.5 644,851 + BPHYT_RS22680 0.76 -1.0 644,902 + BPHYT_RS22680 0.88 +2.0 644,903 - BPHYT_RS22680 0.88 +1.8 644,903 - BPHYT_RS22680 0.88 +0.3 644,903 - BPHYT_RS22680 0.88 +0.2 644,906 + BPHYT_RS22680 0.88 +0.1 644,907 - BPHYT_RS22680 0.89 -0.9 644,938 - -2.1
Or see this region's nucleotide sequence