Experiment: 24hr Phyto Lib Only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19790 and BPHYT_RS19795 overlap by 4 nucleotides BPHYT_RS19795 and BPHYT_RS19800 overlap by 8 nucleotides
BPHYT_RS19790: BPHYT_RS19790 - peptidase M23, at 4,452,301 to 4,454,715
_RS19790
BPHYT_RS19795: BPHYT_RS19795 - chemotaxis protein CheW, at 4,454,712 to 4,455,392
_RS19795
BPHYT_RS19800: BPHYT_RS19800 - chemotaxis protein CheR, at 4,455,385 to 4,456,815
_RS19800
Position (kb) 4454
4455
4456 Strain fitness (log2 ratio) -2
-1
0
1 at 4453.733 kb on + strand, within BPHYT_RS19790 at 4453.734 kb on - strand at 4453.734 kb on - strand, within BPHYT_RS19790 at 4453.803 kb on + strand, within BPHYT_RS19790 at 4453.803 kb on + strand, within BPHYT_RS19790 at 4453.803 kb on + strand, within BPHYT_RS19790 at 4453.803 kb on + strand, within BPHYT_RS19790 at 4453.803 kb on + strand, within BPHYT_RS19790 at 4453.804 kb on - strand, within BPHYT_RS19790 at 4453.804 kb on - strand, within BPHYT_RS19790 at 4453.804 kb on - strand, within BPHYT_RS19790 at 4453.804 kb on - strand, within BPHYT_RS19790 at 4454.002 kb on + strand, within BPHYT_RS19790 at 4454.002 kb on + strand, within BPHYT_RS19790 at 4454.003 kb on - strand, within BPHYT_RS19790 at 4454.151 kb on + strand, within BPHYT_RS19790 at 4454.242 kb on + strand, within BPHYT_RS19790 at 4454.242 kb on + strand, within BPHYT_RS19790 at 4454.295 kb on + strand, within BPHYT_RS19790 at 4454.296 kb on - strand, within BPHYT_RS19790 at 4455.030 kb on + strand, within BPHYT_RS19795 at 4455.030 kb on + strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.078 kb on - strand, within BPHYT_RS19795 at 4455.078 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.305 kb on - strand, within BPHYT_RS19795 at 4455.512 kb on + strand at 4455.512 kb on + strand at 4455.513 kb on - strand at 4455.513 kb on - strand at 4455.584 kb on + strand, within BPHYT_RS19800 at 4455.685 kb on + strand, within BPHYT_RS19800 at 4455.685 kb on + strand, within BPHYT_RS19800 at 4455.686 kb on - strand, within BPHYT_RS19800 at 4455.782 kb on + strand, within BPHYT_RS19800 at 4455.782 kb on + strand, within BPHYT_RS19800 at 4455.783 kb on - strand, within BPHYT_RS19800 at 4455.783 kb on - strand, within BPHYT_RS19800 at 4455.967 kb on - strand, within BPHYT_RS19800 at 4456.049 kb on - strand, within BPHYT_RS19800 at 4456.149 kb on - strand, within BPHYT_RS19800 at 4456.149 kb on - strand, within BPHYT_RS19800
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only remove 4,453,733 + BPHYT_RS19790 0.59 +1.3 4,453,734 - +1.3 4,453,734 - BPHYT_RS19790 0.59 -0.1 4,453,803 + BPHYT_RS19790 0.62 -1.2 4,453,803 + BPHYT_RS19790 0.62 -0.2 4,453,803 + BPHYT_RS19790 0.62 -0.2 4,453,803 + BPHYT_RS19790 0.62 +0.4 4,453,803 + BPHYT_RS19790 0.62 -0.3 4,453,804 - BPHYT_RS19790 0.62 +1.5 4,453,804 - BPHYT_RS19790 0.62 -0.3 4,453,804 - BPHYT_RS19790 0.62 -0.6 4,453,804 - BPHYT_RS19790 0.62 -0.9 4,454,002 + BPHYT_RS19790 0.70 -0.4 4,454,002 + BPHYT_RS19790 0.70 +0.3 4,454,003 - BPHYT_RS19790 0.70 +0.2 4,454,151 + BPHYT_RS19790 0.77 -0.4 4,454,242 + BPHYT_RS19790 0.80 -1.3 4,454,242 + BPHYT_RS19790 0.80 +0.3 4,454,295 + BPHYT_RS19790 0.83 +0.7 4,454,296 - BPHYT_RS19790 0.83 -2.7 4,455,030 + BPHYT_RS19795 0.47 +1.2 4,455,030 + BPHYT_RS19795 0.47 +0.8 4,455,031 - BPHYT_RS19795 0.47 -2.2 4,455,031 - BPHYT_RS19795 0.47 -0.2 4,455,031 - BPHYT_RS19795 0.47 -0.6 4,455,031 - BPHYT_RS19795 0.47 -1.2 4,455,031 - BPHYT_RS19795 0.47 -1.3 4,455,078 - BPHYT_RS19795 0.54 +0.1 4,455,078 - BPHYT_RS19795 0.54 +0.4 4,455,301 - BPHYT_RS19795 0.86 -0.6 4,455,301 - BPHYT_RS19795 0.86 +0.4 4,455,301 - BPHYT_RS19795 0.86 +0.0 4,455,301 - BPHYT_RS19795 0.86 -0.5 4,455,305 - BPHYT_RS19795 0.87 -0.1 4,455,512 + +0.3 4,455,512 + +0.6 4,455,513 - +0.6 4,455,513 - -0.8 4,455,584 + BPHYT_RS19800 0.14 +0.3 4,455,685 + BPHYT_RS19800 0.21 +1.3 4,455,685 + BPHYT_RS19800 0.21 -1.0 4,455,686 - BPHYT_RS19800 0.21 -0.7 4,455,782 + BPHYT_RS19800 0.28 -0.7 4,455,782 + BPHYT_RS19800 0.28 +0.4 4,455,783 - BPHYT_RS19800 0.28 -0.6 4,455,783 - BPHYT_RS19800 0.28 -1.7 4,455,967 - BPHYT_RS19800 0.41 -1.4 4,456,049 - BPHYT_RS19800 0.46 +0.1 4,456,149 - BPHYT_RS19800 0.53 -0.9 4,456,149 - BPHYT_RS19800 0.53 +1.7
Or see this region's nucleotide sequence