Experiment: 24hr Phyto Lib Only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07085 and BPHYT_RS07090 are separated by 127 nucleotides BPHYT_RS07090 and BPHYT_RS07095 overlap by 31 nucleotides BPHYT_RS07095 and BPHYT_RS07100 are separated by 132 nucleotides
BPHYT_RS07085: BPHYT_RS07085 - LysR family transcriptional regulator, at 1,601,573 to 1,602,496
_RS07085
BPHYT_RS07090: BPHYT_RS07090 - hypothetical protein, at 1,602,624 to 1,602,941
_RS07090
BPHYT_RS07095: BPHYT_RS07095 - LysR family transcriptional regulator, at 1,602,911 to 1,603,837
_RS07095
BPHYT_RS07100: BPHYT_RS07100 - isovaleryl-CoA dehydrogenase, at 1,603,970 to 1,605,736
_RS07100
Position (kb)
1602
1603
1604 Strain fitness (log2 ratio)
-2
-1
0
1 at 1602.200 kb on + strand, within BPHYT_RS07085 at 1602.377 kb on + strand at 1602.565 kb on + strand at 1602.565 kb on + strand at 1602.901 kb on + strand, within BPHYT_RS07090 at 1602.913 kb on - strand at 1602.978 kb on + strand at 1603.530 kb on + strand, within BPHYT_RS07095 at 1603.887 kb on + strand at 1603.888 kb on - strand at 1603.920 kb on + strand at 1603.997 kb on + strand at 1604.193 kb on + strand, within BPHYT_RS07100 at 1604.194 kb on - strand, within BPHYT_RS07100
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only remove 1,602,200 + BPHYT_RS07085 0.68 -0.4 1,602,377 + +1.0 1,602,565 + -0.2 1,602,565 + +0.2 1,602,901 + BPHYT_RS07090 0.87 -0.2 1,602,913 - +0.7 1,602,978 + +0.2 1,603,530 + BPHYT_RS07095 0.67 -1.1 1,603,887 + +0.4 1,603,888 - +0.7 1,603,920 + +1.7 1,603,997 + -1.8 1,604,193 + BPHYT_RS07100 0.13 -0.3 1,604,194 - BPHYT_RS07100 0.13 -0.5
Or see this region's nucleotide sequence