Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02640

Experiment: 24hr Phyto Lib Only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02630 and BPHYT_RS02635 are separated by 313 nucleotidesBPHYT_RS02635 and BPHYT_RS02640 are separated by 66 nucleotidesBPHYT_RS02640 and BPHYT_RS02645 are separated by 44 nucleotides BPHYT_RS02630: BPHYT_RS02630 - amidophosphoribosyltransferase, at 593,879 to 594,844 _RS02630 BPHYT_RS02635: BPHYT_RS02635 - membrane protein, at 595,158 to 595,631 _RS02635 BPHYT_RS02640: BPHYT_RS02640 - cytochrome C oxidase, at 595,698 to 597,332 _RS02640 BPHYT_RS02645: BPHYT_RS02645 - cytochrome oxidase subunit I, at 597,377 to 598,990 _RS02645 Position (kb) 595 596 597 598Strain fitness (log2 ratio) -2 -1 0 1 2 3at 594.997 kb on - strandat 594.998 kb on + strandat 594.999 kb on - strandat 594.999 kb on - strandat 595.067 kb on + strandat 595.067 kb on + strandat 595.067 kb on + strandat 595.068 kb on - strandat 595.068 kb on - strandat 595.068 kb on - strandat 595.068 kb on - strandat 595.068 kb on - strandat 595.068 kb on - strandat 595.068 kb on - strandat 595.068 kb on - strandat 595.068 kb on - strandat 595.068 kb on - strandat 595.073 kb on - strandat 595.073 kb on - strandat 595.073 kb on - strandat 595.251 kb on + strand, within BPHYT_RS02635at 595.252 kb on - strand, within BPHYT_RS02635at 595.252 kb on - strand, within BPHYT_RS02635at 595.257 kb on + strand, within BPHYT_RS02635at 595.257 kb on + strand, within BPHYT_RS02635at 595.257 kb on + strand, within BPHYT_RS02635at 595.375 kb on + strand, within BPHYT_RS02635at 595.375 kb on + strand, within BPHYT_RS02635at 595.375 kb on + strand, within BPHYT_RS02635at 595.375 kb on + strandat 595.375 kb on + strand, within BPHYT_RS02635at 595.375 kb on + strand, within BPHYT_RS02635at 595.375 kb on + strand, within BPHYT_RS02635at 595.375 kb on + strand, within BPHYT_RS02635at 595.375 kb on + strand, within BPHYT_RS02635at 595.376 kb on - strand, within BPHYT_RS02635at 595.376 kb on - strand, within BPHYT_RS02635at 595.376 kb on - strand, within BPHYT_RS02635at 595.376 kb on - strand, within BPHYT_RS02635at 595.376 kb on - strand, within BPHYT_RS02635at 595.376 kb on - strandat 595.376 kb on - strand, within BPHYT_RS02635at 595.377 kb on + strand, within BPHYT_RS02635at 595.377 kb on + strand, within BPHYT_RS02635at 595.377 kb on + strand, within BPHYT_RS02635at 595.377 kb on + strandat 595.377 kb on + strand, within BPHYT_RS02635at 595.377 kb on + strand, within BPHYT_RS02635at 595.377 kb on + strand, within BPHYT_RS02635at 595.377 kb on + strand, within BPHYT_RS02635at 595.377 kb on + strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strandat 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.378 kb on - strand, within BPHYT_RS02635at 595.399 kb on - strand, within BPHYT_RS02635at 595.629 kb on + strandat 595.629 kb on + strandat 595.630 kb on - strandat 595.637 kb on + strandat 595.637 kb on + strandat 595.637 kb on + strandat 595.639 kb on - strandat 595.721 kb on + strandat 595.722 kb on - strandat 595.944 kb on + strand, within BPHYT_RS02640at 595.944 kb on + strand, within BPHYT_RS02640at 595.944 kb on + strand, within BPHYT_RS02640at 595.944 kb on + strand, within BPHYT_RS02640at 595.945 kb on - strand, within BPHYT_RS02640at 595.945 kb on - strand, within BPHYT_RS02640at 596.158 kb on - strand, within BPHYT_RS02640at 596.158 kb on - strand, within BPHYT_RS02640at 596.250 kb on + strand, within BPHYT_RS02640at 596.250 kb on + strand, within BPHYT_RS02640at 596.250 kb on + strand, within BPHYT_RS02640at 596.251 kb on - strand, within BPHYT_RS02640at 596.251 kb on - strand, within BPHYT_RS02640at 596.251 kb on - strand, within BPHYT_RS02640at 596.340 kb on + strand, within BPHYT_RS02640at 596.340 kb on + strand, within BPHYT_RS02640at 596.340 kb on + strand, within BPHYT_RS02640at 596.340 kb on + strand, within BPHYT_RS02640at 596.341 kb on - strand, within BPHYT_RS02640at 596.488 kb on + strand, within BPHYT_RS02640at 596.488 kb on + strand, within BPHYT_RS02640at 596.489 kb on - strand, within BPHYT_RS02640at 596.489 kb on - strand, within BPHYT_RS02640at 596.489 kb on - strand, within BPHYT_RS02640at 596.506 kb on - strand, within BPHYT_RS02640at 596.572 kb on - strand, within BPHYT_RS02640at 596.611 kb on - strand, within BPHYT_RS02640at 596.611 kb on - strand, within BPHYT_RS02640at 596.799 kb on + strand, within BPHYT_RS02640at 596.808 kb on - strand, within BPHYT_RS02640at 597.036 kb on + strand, within BPHYT_RS02640at 597.036 kb on + strand, within BPHYT_RS02640at 597.496 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only
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594,997 - +0.4
594,998 + -0.8
594,999 - +1.6
594,999 - +1.2
595,067 + -1.4
595,067 + -0.3
595,067 + +0.3
595,068 - +2.3
595,068 - +0.7
595,068 - +1.9
595,068 - +0.7
595,068 - +1.3
595,068 - +0.4
595,068 - +0.6
595,068 - +1.5
595,068 - +0.8
595,068 - +1.4
595,073 - +1.4
595,073 - +1.4
595,073 - +1.2
595,251 + BPHYT_RS02635 0.20 -0.5
595,252 - BPHYT_RS02635 0.20 +1.9
595,252 - BPHYT_RS02635 0.20 +1.8
595,257 + BPHYT_RS02635 0.21 -0.8
595,257 + BPHYT_RS02635 0.21 -0.1
595,257 + BPHYT_RS02635 0.21 -0.1
595,375 + BPHYT_RS02635 0.46 -0.9
595,375 + BPHYT_RS02635 0.46 -1.0
595,375 + BPHYT_RS02635 0.46 +0.3
595,375 + +0.7
595,375 + BPHYT_RS02635 0.46 -0.2
595,375 + BPHYT_RS02635 0.46 -0.4
595,375 + BPHYT_RS02635 0.46 +1.3
595,375 + BPHYT_RS02635 0.46 -0.7
595,375 + BPHYT_RS02635 0.46 +0.1
595,376 - BPHYT_RS02635 0.46 +1.9
595,376 - BPHYT_RS02635 0.46 +1.1
595,376 - BPHYT_RS02635 0.46 +1.8
595,376 - BPHYT_RS02635 0.46 +1.9
595,376 - BPHYT_RS02635 0.46 +1.4
595,376 - -0.0
595,376 - BPHYT_RS02635 0.46 +1.7
595,377 + BPHYT_RS02635 0.46 +1.0
595,377 + BPHYT_RS02635 0.46 +0.4
595,377 + BPHYT_RS02635 0.46 -2.0
595,377 + +1.0
595,377 + BPHYT_RS02635 0.46 -1.1
595,377 + BPHYT_RS02635 0.46 -0.3
595,377 + BPHYT_RS02635 0.46 +0.2
595,377 + BPHYT_RS02635 0.46 -0.4
595,377 + BPHYT_RS02635 0.46 -0.1
595,378 - BPHYT_RS02635 0.46 +2.1
595,378 - BPHYT_RS02635 0.46 +1.4
595,378 - BPHYT_RS02635 0.46 +1.4
595,378 - BPHYT_RS02635 0.46 +2.0
595,378 - BPHYT_RS02635 0.46 +2.0
595,378 - BPHYT_RS02635 0.46 +1.8
595,378 - BPHYT_RS02635 0.46 +2.0
595,378 - BPHYT_RS02635 0.46 +1.5
595,378 - BPHYT_RS02635 0.46 +1.4
595,378 - BPHYT_RS02635 0.46 +1.4
595,378 - BPHYT_RS02635 0.46 +1.8
595,378 - +1.3
595,378 - BPHYT_RS02635 0.46 +1.8
595,378 - BPHYT_RS02635 0.46 +1.4
595,378 - BPHYT_RS02635 0.46 +1.8
595,378 - BPHYT_RS02635 0.46 +1.4
595,378 - BPHYT_RS02635 0.46 +1.5
595,378 - BPHYT_RS02635 0.46 +1.4
595,378 - BPHYT_RS02635 0.46 +2.0
595,378 - BPHYT_RS02635 0.46 +1.8
595,378 - BPHYT_RS02635 0.46 +2.0
595,399 - BPHYT_RS02635 0.51 +1.9
595,629 + -0.2
595,629 + -0.6
595,630 - +1.2
595,637 + +1.0
595,637 + -1.6
595,637 + +0.2
595,639 - +2.0
595,721 + +1.8
595,722 - +2.9
595,944 + BPHYT_RS02640 0.15 +1.3
595,944 + BPHYT_RS02640 0.15 +1.6
595,944 + BPHYT_RS02640 0.15 +1.6
595,944 + BPHYT_RS02640 0.15 +1.9
595,945 - BPHYT_RS02640 0.15 +1.4
595,945 - BPHYT_RS02640 0.15 +1.9
596,158 - BPHYT_RS02640 0.28 +2.2
596,158 - BPHYT_RS02640 0.28 +0.8
596,250 + BPHYT_RS02640 0.34 +1.8
596,250 + BPHYT_RS02640 0.34 +1.5
596,250 + BPHYT_RS02640 0.34 +1.4
596,251 - BPHYT_RS02640 0.34 +1.5
596,251 - BPHYT_RS02640 0.34 +1.2
596,251 - BPHYT_RS02640 0.34 +1.3
596,340 + BPHYT_RS02640 0.39 +1.1
596,340 + BPHYT_RS02640 0.39 +1.5
596,340 + BPHYT_RS02640 0.39 +1.3
596,340 + BPHYT_RS02640 0.39 +1.7
596,341 - BPHYT_RS02640 0.39 +1.6
596,488 + BPHYT_RS02640 0.48 +1.4
596,488 + BPHYT_RS02640 0.48 +1.0
596,489 - BPHYT_RS02640 0.48 +0.6
596,489 - BPHYT_RS02640 0.48 +1.3
596,489 - BPHYT_RS02640 0.48 +1.3
596,506 - BPHYT_RS02640 0.49 +1.4
596,572 - BPHYT_RS02640 0.53 +1.2
596,611 - BPHYT_RS02640 0.56 +1.5
596,611 - BPHYT_RS02640 0.56 +0.9
596,799 + BPHYT_RS02640 0.67 +1.0
596,808 - BPHYT_RS02640 0.68 +2.4
597,036 + BPHYT_RS02640 0.82 -0.3
597,036 + BPHYT_RS02640 0.82 -0.0
597,496 + +0.9

Or see this region's nucleotide sequence