Experiment: 24hr Phyto Lib Only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02535 and BPHYT_RS02540 are separated by 121 nucleotides BPHYT_RS02540 and BPHYT_RS02545 are separated by 415 nucleotides BPHYT_RS02545 and BPHYT_RS02550 are separated by 44 nucleotides
BPHYT_RS02535: BPHYT_RS02535 - magnesium chelatase subunit ChlI, at 575,663 to 577,261
_RS02535
BPHYT_RS02540: BPHYT_RS02540 - hypothetical protein, at 577,383 to 577,637
_RS02540
BPHYT_RS02545: BPHYT_RS02545 - nitrogen regulatory protein P-II 1, at 578,053 to 578,391
_RS02545
BPHYT_RS02550: BPHYT_RS02550 - ammonia channel protein, at 578,436 to 579,944
_RS02550
Position (kb) 577
578 Strain fitness (log2 ratio) -2
-1
0
1 at 576.601 kb on + strand, within BPHYT_RS02535 at 576.601 kb on + strand, within BPHYT_RS02535 at 576.654 kb on + strand, within BPHYT_RS02535 at 576.655 kb on - strand, within BPHYT_RS02535 at 576.655 kb on - strand, within BPHYT_RS02535 at 576.771 kb on + strand, within BPHYT_RS02535 at 576.771 kb on + strand, within BPHYT_RS02535 at 576.772 kb on - strand, within BPHYT_RS02535 at 576.772 kb on - strand, within BPHYT_RS02535 at 576.772 kb on - strand, within BPHYT_RS02535 at 577.365 kb on + strand at 577.366 kb on - strand at 577.461 kb on - strand, within BPHYT_RS02540 at 577.614 kb on - strand at 577.725 kb on - strand at 577.791 kb on + strand at 577.791 kb on + strand at 577.792 kb on - strand at 577.792 kb on - strand at 577.792 kb on - strand at 577.792 kb on - strand at 577.805 kb on - strand at 577.805 kb on - strand at 578.018 kb on - strand at 578.038 kb on + strand at 578.039 kb on - strand at 578.189 kb on - strand, within BPHYT_RS02545 at 578.204 kb on - strand, within BPHYT_RS02545 at 578.204 kb on - strand, within BPHYT_RS02545 at 578.390 kb on - strand at 578.403 kb on - strand at 578.414 kb on + strand at 578.415 kb on - strand at 578.415 kb on - strand at 578.446 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only remove 576,601 + BPHYT_RS02535 0.59 -0.4 576,601 + BPHYT_RS02535 0.59 +0.3 576,654 + BPHYT_RS02535 0.62 -1.3 576,655 - BPHYT_RS02535 0.62 +0.2 576,655 - BPHYT_RS02535 0.62 +0.2 576,771 + BPHYT_RS02535 0.69 -0.2 576,771 + BPHYT_RS02535 0.69 +0.7 576,772 - BPHYT_RS02535 0.69 -0.3 576,772 - BPHYT_RS02535 0.69 -0.1 576,772 - BPHYT_RS02535 0.69 -0.1 577,365 + -0.3 577,366 - -0.1 577,461 - BPHYT_RS02540 0.31 +1.7 577,614 - +0.9 577,725 - -0.1 577,791 + +1.2 577,791 + -2.3 577,792 - +0.8 577,792 - -1.2 577,792 - -0.2 577,792 - +0.1 577,805 - -0.0 577,805 - -0.1 578,018 - -1.2 578,038 + -0.2 578,039 - -0.5 578,189 - BPHYT_RS02545 0.40 +0.3 578,204 - BPHYT_RS02545 0.45 +0.5 578,204 - BPHYT_RS02545 0.45 +0.6 578,390 - -0.6 578,403 - -0.9 578,414 + -0.9 578,415 - +0.5 578,415 - -0.0 578,446 + -0.2
Or see this region's nucleotide sequence