Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26910

Experiment: 24hr Phyto Lib Only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26905 and BPHYT_RS26910 are separated by 67 nucleotides BPHYT_RS26905: BPHYT_RS26905 - pilus assembly protein CpaE, at 1,608,707 to 1,609,909 _RS26905 BPHYT_RS26910: BPHYT_RS26910 - hypothetical protein, at 1,609,977 to 1,610,264 _RS26910 Position (kb) 1609 1610 1611Strain fitness (log2 ratio) -2 -1 0 1at 1610.232 kb on + strand, within BPHYT_RS26910at 1610.232 kb on + strand, within BPHYT_RS26910at 1610.294 kb on - strandat 1610.696 kb on + strandat 1610.783 kb on - strandat 1610.783 kb on - strandat 1611.045 kb on - strandat 1611.089 kb on - strandat 1611.148 kb on + strandat 1611.149 kb on - strandat 1611.188 kb on - strandat 1611.199 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only
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1,610,232 + BPHYT_RS26910 0.89 -0.7
1,610,232 + BPHYT_RS26910 0.89 +0.5
1,610,294 - +0.3
1,610,696 + -1.0
1,610,783 - -0.2
1,610,783 - +1.3
1,611,045 - -0.3
1,611,089 - -1.3
1,611,148 + -1.5
1,611,149 - -1.9
1,611,188 - +0.3
1,611,199 - +0.5

Or see this region's nucleotide sequence