Experiment: 24hr Phyto Lib Only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26770 and BPHYT_RS26775 are separated by 9 nucleotides BPHYT_RS26775 and BPHYT_RS26780 are separated by 10 nucleotides BPHYT_RS26780 and BPHYT_RS26785 are separated by 18 nucleotides
BPHYT_RS26770: BPHYT_RS26770 - histidine kinase, at 1,575,698 to 1,576,825
_RS26770
BPHYT_RS26775: BPHYT_RS26775 - chemotaxis protein CheB, at 1,576,835 to 1,577,449
_RS26775
BPHYT_RS26780: BPHYT_RS26780 - chemotaxis protein CheR, at 1,577,460 to 1,578,305
_RS26780
BPHYT_RS26785: BPHYT_RS26785 - chemotaxis protein CheY, at 1,578,324 to 1,581,911
_RS26785
Position (kb) 1577
1578
1579 Strain fitness (log2 ratio) -1
0
1
2 at 1576.887 kb on + strand at 1577.182 kb on + strand, within BPHYT_RS26775 at 1577.461 kb on + strand at 1577.462 kb on - strand at 1577.512 kb on + strand at 1577.623 kb on + strand, within BPHYT_RS26780 at 1577.743 kb on + strand, within BPHYT_RS26780 at 1577.794 kb on + strand, within BPHYT_RS26780 at 1578.074 kb on - strand, within BPHYT_RS26780 at 1578.217 kb on + strand, within BPHYT_RS26780 at 1578.217 kb on + strand, within BPHYT_RS26780 at 1578.217 kb on + strand, within BPHYT_RS26780 at 1578.325 kb on + strand at 1578.892 kb on + strand, within BPHYT_RS26785 at 1579.205 kb on + strand, within BPHYT_RS26785
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only remove 1,576,887 + -1.2 1,577,182 + BPHYT_RS26775 0.56 -0.8 1,577,461 + +0.3 1,577,462 - -0.1 1,577,512 + -0.5 1,577,623 + BPHYT_RS26780 0.19 -0.1 1,577,743 + BPHYT_RS26780 0.33 +0.5 1,577,794 + BPHYT_RS26780 0.39 +0.5 1,578,074 - BPHYT_RS26780 0.73 +2.6 1,578,217 + BPHYT_RS26780 0.89 +0.6 1,578,217 + BPHYT_RS26780 0.89 -0.6 1,578,217 + BPHYT_RS26780 0.89 -0.6 1,578,325 + +0.3 1,578,892 + BPHYT_RS26785 0.16 +1.8 1,579,205 + BPHYT_RS26785 0.25 +0.6
Or see this region's nucleotide sequence