Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26490

Experiment: 24hr Phyto Lib Only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26485 and BPHYT_RS26490 are separated by 91 nucleotidesBPHYT_RS26490 and BPHYT_RS26495 are separated by 36 nucleotidesBPHYT_RS26495 and BPHYT_RS26500 are separated by 39 nucleotides BPHYT_RS26485: BPHYT_RS26485 - aldo/keto reductase, at 1,513,702 to 1,514,703 _RS26485 BPHYT_RS26490: BPHYT_RS26490 - hypothetical protein, at 1,514,795 to 1,515,007 _RS26490 BPHYT_RS26495: BPHYT_RS26495 - glutathione S-transferase, at 1,515,044 to 1,515,682 _RS26495 BPHYT_RS26500: BPHYT_RS26500 - ATPase, at 1,515,722 to 1,516,171 _RS26500 Position (kb) 1514 1515 1516Strain fitness (log2 ratio) -2 -1 0 1at 1514.028 kb on - strand, within BPHYT_RS26485at 1514.116 kb on - strand, within BPHYT_RS26485at 1514.400 kb on + strand, within BPHYT_RS26485at 1514.509 kb on + strand, within BPHYT_RS26485at 1514.728 kb on + strandat 1514.729 kb on - strandat 1514.770 kb on - strandat 1514.775 kb on + strandat 1514.825 kb on - strand, within BPHYT_RS26490at 1515.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr Phyto Lib Only
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1,514,028 - BPHYT_RS26485 0.33 +1.2
1,514,116 - BPHYT_RS26485 0.41 +0.8
1,514,400 + BPHYT_RS26485 0.70 +0.2
1,514,509 + BPHYT_RS26485 0.81 -0.0
1,514,728 + -0.6
1,514,729 - +0.7
1,514,770 - -0.9
1,514,775 + +0.8
1,514,825 - BPHYT_RS26490 0.14 -2.2
1,515,670 - -0.8

Or see this region's nucleotide sequence