Experiment: 24hr PHYTO6 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30860 and BPHYT_RS30865 overlap by 1 nucleotides BPHYT_RS30865 and BPHYT_RS30870 are separated by 109 nucleotides BPHYT_RS30870 and BPHYT_RS30875 are separated by 34 nucleotides
BPHYT_RS30860: BPHYT_RS30860 - sugar ABC transporter permease, at 2,478,673 to 2,479,662
_RS30860
BPHYT_RS30865: BPHYT_RS30865 - sugar ABC transporter ATP-binding protein, at 2,479,662 to 2,480,432
_RS30865
BPHYT_RS30870: BPHYT_RS30870 - chromate transporter, at 2,480,542 to 2,481,078
_RS30870
BPHYT_RS30875: BPHYT_RS30875 - chromate transporter, at 2,481,113 to 2,481,682
_RS30875
Position (kb) 2480
2481
2482 Strain fitness (log2 ratio) -1
0
1
2
3 at 2479.960 kb on - strand at 2480.164 kb on + strand, within BPHYT_RS30865 at 2480.164 kb on + strand, within BPHYT_RS30865 at 2480.165 kb on - strand, within BPHYT_RS30865 at 2480.284 kb on - strand, within BPHYT_RS30865 at 2480.696 kb on + strand, within BPHYT_RS30870 at 2480.697 kb on - strand, within BPHYT_RS30870 at 2481.114 kb on + strand at 2481.520 kb on + strand at 2481.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 0.1 remove 2,479,960 - +0.8 2,480,164 + BPHYT_RS30865 0.65 -0.2 2,480,164 + BPHYT_RS30865 0.65 +1.8 2,480,165 - BPHYT_RS30865 0.65 -0.2 2,480,284 - BPHYT_RS30865 0.81 +1.6 2,480,696 + BPHYT_RS30870 0.29 -0.2 2,480,697 - BPHYT_RS30870 0.29 +0.2 2,481,114 + +0.3 2,481,520 + +3.0 2,481,867 + -0.1
Or see this region's nucleotide sequence