Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26305

Experiment: 24hr PHYTO6 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26300 and BPHYT_RS26305 overlap by 4 nucleotidesBPHYT_RS26305 and BPHYT_RS26310 are separated by 234 nucleotides BPHYT_RS26300: BPHYT_RS26300 - ATP-dependent DNA ligase, at 1,471,356 to 1,473,032 _RS26300 BPHYT_RS26305: BPHYT_RS26305 - exonuclease, at 1,473,029 to 1,474,177 _RS26305 BPHYT_RS26310: BPHYT_RS26310 - ribonuclease R, at 1,474,412 to 1,475,314 _RS26310 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -2 -1 0 1at 1472.654 kb on - strand, within BPHYT_RS26300at 1472.953 kb on + strandat 1473.011 kb on - strandat 1473.674 kb on - strand, within BPHYT_RS26305at 1474.011 kb on + strand, within BPHYT_RS26305at 1474.092 kb on + strandat 1474.114 kb on - strandat 1474.171 kb on + strandat 1474.171 kb on + strandat 1474.240 kb on + strandat 1474.337 kb on - strandat 1474.440 kb on + strandat 1474.440 kb on + strandat 1474.442 kb on + strandat 1474.442 kb on + strandat 1474.442 kb on + strandat 1474.533 kb on - strand, within BPHYT_RS26310at 1474.536 kb on - strand, within BPHYT_RS26310

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 0.1
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1,472,654 - BPHYT_RS26300 0.77 -1.6
1,472,953 + +0.2
1,473,011 - -0.7
1,473,674 - BPHYT_RS26305 0.56 -1.8
1,474,011 + BPHYT_RS26305 0.85 -1.4
1,474,092 + -0.3
1,474,114 - +0.3
1,474,171 + -0.3
1,474,171 + -0.7
1,474,240 + -0.5
1,474,337 - +0.1
1,474,440 + -1.0
1,474,440 + -1.9
1,474,442 + -1.1
1,474,442 + -1.0
1,474,442 + -1.7
1,474,533 - BPHYT_RS26310 0.13 +0.2
1,474,536 - BPHYT_RS26310 0.14 +0.7

Or see this region's nucleotide sequence