Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07095

Experiment: 24hr PHYTO6 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07085 and BPHYT_RS07090 are separated by 127 nucleotidesBPHYT_RS07090 and BPHYT_RS07095 overlap by 31 nucleotidesBPHYT_RS07095 and BPHYT_RS07100 are separated by 132 nucleotides BPHYT_RS07085: BPHYT_RS07085 - LysR family transcriptional regulator, at 1,601,573 to 1,602,496 _RS07085 BPHYT_RS07090: BPHYT_RS07090 - hypothetical protein, at 1,602,624 to 1,602,941 _RS07090 BPHYT_RS07095: BPHYT_RS07095 - LysR family transcriptional regulator, at 1,602,911 to 1,603,837 _RS07095 BPHYT_RS07100: BPHYT_RS07100 - isovaleryl-CoA dehydrogenase, at 1,603,970 to 1,605,736 _RS07100 Position (kb) 1602 1603 1604Strain fitness (log2 ratio) -2 -1 0 1at 1602.200 kb on + strand, within BPHYT_RS07085at 1602.377 kb on + strandat 1602.565 kb on + strandat 1602.565 kb on + strandat 1602.901 kb on + strand, within BPHYT_RS07090at 1602.913 kb on - strandat 1602.978 kb on + strandat 1603.530 kb on + strand, within BPHYT_RS07095at 1603.887 kb on + strandat 1603.888 kb on - strandat 1603.920 kb on + strandat 1603.997 kb on + strandat 1604.193 kb on + strand, within BPHYT_RS07100at 1604.194 kb on - strand, within BPHYT_RS07100

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 0.1
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1,602,200 + BPHYT_RS07085 0.68 +0.1
1,602,377 + -0.0
1,602,565 + +0.9
1,602,565 + +0.3
1,602,901 + BPHYT_RS07090 0.87 -1.4
1,602,913 - +0.7
1,602,978 + -0.5
1,603,530 + BPHYT_RS07095 0.67 -2.0
1,603,887 + -0.1
1,603,888 - +0.7
1,603,920 + +1.6
1,603,997 + -1.8
1,604,193 + BPHYT_RS07100 0.13 -0.3
1,604,194 - BPHYT_RS07100 0.13 -0.5

Or see this region's nucleotide sequence