Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02480

Experiment: 24hr PHYTO6 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02475 and BPHYT_RS02480 are separated by 31 nucleotidesBPHYT_RS02480 and BPHYT_RS02485 are separated by 573 nucleotides BPHYT_RS02475: BPHYT_RS02475 - membrane protein, at 560,633 to 562,300 _RS02475 BPHYT_RS02480: BPHYT_RS02480 - alkaline phosphatase, at 562,332 to 563,102 _RS02480 BPHYT_RS02485: BPHYT_RS02485 - membrane protein, at 563,676 to 564,464 _RS02485 Position (kb) 562 563 564Strain fitness (log2 ratio) -2 -1 0 1 2at 561.477 kb on - strand, within BPHYT_RS02475at 561.477 kb on - strand, within BPHYT_RS02475at 561.529 kb on + strand, within BPHYT_RS02475at 561.786 kb on - strand, within BPHYT_RS02475at 562.094 kb on + strand, within BPHYT_RS02475at 562.439 kb on - strand, within BPHYT_RS02480at 562.471 kb on + strand, within BPHYT_RS02480at 563.144 kb on + strandat 563.197 kb on - strandat 563.204 kb on + strandat 563.205 kb on - strandat 563.286 kb on + strandat 563.546 kb on + strandat 563.638 kb on + strandat 563.639 kb on - strandat 563.652 kb on + strandat 563.667 kb on + strandat 563.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 0.1
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561,477 - BPHYT_RS02475 0.51 -0.0
561,477 - BPHYT_RS02475 0.51 -0.2
561,529 + BPHYT_RS02475 0.54 +0.9
561,786 - BPHYT_RS02475 0.69 -2.0
562,094 + BPHYT_RS02475 0.88 +0.8
562,439 - BPHYT_RS02480 0.14 -1.9
562,471 + BPHYT_RS02480 0.18 -0.9
563,144 + -0.1
563,197 - -0.7
563,204 + +0.0
563,205 - -1.2
563,286 + +1.9
563,546 + -0.9
563,638 + -1.1
563,639 - -1.1
563,652 + -0.4
563,667 + +0.7
563,691 - -0.7

Or see this region's nucleotide sequence