Experiment: 24hr PHYTO6 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02405 and BPHYT_RS02410 are separated by 8 nucleotides BPHYT_RS02410 and BPHYT_RS02415 are separated by 320 nucleotides BPHYT_RS02415 and BPHYT_RS02420 are separated by 13 nucleotides BPHYT_RS02420 and BPHYT_RS02425 overlap by 29 nucleotides
BPHYT_RS02405: BPHYT_RS02405 - ferredoxin, at 548,841 to 549,164
_RS02405
BPHYT_RS02410: BPHYT_RS02410 - alpha/beta hydrolase, at 549,173 to 549,817
_RS02410
BPHYT_RS02415: BPHYT_RS02415 - cytochrome C550, at 550,138 to 551,367
_RS02415
BPHYT_RS02420: BPHYT_RS02420 - cytochrome C550, at 551,381 to 552,346
_RS02420
BPHYT_RS02425: BPHYT_RS02425 - hypothetical protein, at 552,318 to 552,587
_RS02425
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 549.162 kb on + strand at 549.162 kb on + strand at 549.163 kb on - strand at 549.163 kb on - strand at 549.163 kb on - strand at 549.163 kb on - strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.375 kb on - strand, within BPHYT_RS02410 at 549.375 kb on - strand, within BPHYT_RS02410 at 549.375 kb on - strand at 549.383 kb on + strand, within BPHYT_RS02410 at 549.383 kb on + strand, within BPHYT_RS02410 at 549.816 kb on - strand at 549.851 kb on + strand at 549.868 kb on + strand at 549.869 kb on - strand at 549.891 kb on + strand at 549.891 kb on + strand at 549.911 kb on + strand at 549.911 kb on + strand at 549.912 kb on - strand at 550.138 kb on - strand at 550.138 kb on - strand at 550.397 kb on - strand, within BPHYT_RS02415 at 550.540 kb on + strand, within BPHYT_RS02415 at 550.596 kb on - strand, within BPHYT_RS02415 at 550.687 kb on - strand, within BPHYT_RS02415 at 550.706 kb on - strand, within BPHYT_RS02415 at 550.768 kb on + strand, within BPHYT_RS02415 at 550.769 kb on - strand, within BPHYT_RS02415 at 550.798 kb on + strand, within BPHYT_RS02415 at 550.798 kb on + strand, within BPHYT_RS02415 at 550.798 kb on + strand, within BPHYT_RS02415 at 551.054 kb on - strand, within BPHYT_RS02415 at 551.054 kb on - strand, within BPHYT_RS02415 at 551.137 kb on + strand, within BPHYT_RS02415 at 551.137 kb on + strand, within BPHYT_RS02415 at 551.137 kb on + strand, within BPHYT_RS02415 at 551.138 kb on - strand, within BPHYT_RS02415 at 551.365 kb on + strand at 551.365 kb on + strand at 551.366 kb on - strand at 551.366 kb on - strand at 551.420 kb on + strand at 551.421 kb on - strand at 551.502 kb on - strand, within BPHYT_RS02420 at 551.520 kb on - strand, within BPHYT_RS02420 at 551.520 kb on - strand, within BPHYT_RS02420 at 551.714 kb on + strand, within BPHYT_RS02420 at 551.716 kb on + strand, within BPHYT_RS02420 at 551.716 kb on + strand, within BPHYT_RS02420 at 551.781 kb on + strand, within BPHYT_RS02420 at 551.782 kb on - strand, within BPHYT_RS02420 at 551.782 kb on - strand, within BPHYT_RS02420 at 551.924 kb on + strand, within BPHYT_RS02420 at 551.925 kb on - strand, within BPHYT_RS02420 at 551.925 kb on - strand, within BPHYT_RS02420 at 552.257 kb on + strand at 552.266 kb on + strand at 552.266 kb on + strand at 552.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 0.1 remove 549,162 + +1.2 549,162 + -0.2 549,163 - -0.1 549,163 - -0.3 549,163 - -0.5 549,163 - +0.4 549,180 + +0.0 549,180 + -0.4 549,180 + -0.6 549,180 + +0.5 549,180 + +0.3 549,181 - -0.4 549,181 - -0.5 549,181 - +0.1 549,375 - BPHYT_RS02410 0.31 +0.2 549,375 - BPHYT_RS02410 0.31 -0.0 549,375 - +2.3 549,383 + BPHYT_RS02410 0.33 -0.0 549,383 + BPHYT_RS02410 0.33 -0.6 549,816 - +0.0 549,851 + -0.6 549,868 + +0.7 549,869 - -0.0 549,891 + -0.5 549,891 + +0.6 549,911 + +0.6 549,911 + -0.9 549,912 - -0.3 550,138 - +1.3 550,138 - -2.2 550,397 - BPHYT_RS02415 0.21 +0.3 550,540 + BPHYT_RS02415 0.33 -1.6 550,596 - BPHYT_RS02415 0.37 -1.5 550,687 - BPHYT_RS02415 0.45 -0.4 550,706 - BPHYT_RS02415 0.46 +0.3 550,768 + BPHYT_RS02415 0.51 -1.4 550,769 - BPHYT_RS02415 0.51 +2.3 550,798 + BPHYT_RS02415 0.54 -0.5 550,798 + BPHYT_RS02415 0.54 +1.3 550,798 + BPHYT_RS02415 0.54 +0.5 551,054 - BPHYT_RS02415 0.74 -2.7 551,054 - BPHYT_RS02415 0.74 +0.3 551,137 + BPHYT_RS02415 0.81 -0.9 551,137 + BPHYT_RS02415 0.81 +0.3 551,137 + BPHYT_RS02415 0.81 +0.7 551,138 - BPHYT_RS02415 0.81 +1.3 551,365 + +0.0 551,365 + -1.5 551,366 - +0.2 551,366 - +1.2 551,420 + -0.3 551,421 - -1.2 551,502 - BPHYT_RS02420 0.13 +0.7 551,520 - BPHYT_RS02420 0.14 +0.3 551,520 - BPHYT_RS02420 0.14 -0.6 551,714 + BPHYT_RS02420 0.34 +0.4 551,716 + BPHYT_RS02420 0.35 +0.7 551,716 + BPHYT_RS02420 0.35 -0.0 551,781 + BPHYT_RS02420 0.41 -1.9 551,782 - BPHYT_RS02420 0.42 +1.0 551,782 - BPHYT_RS02420 0.42 +0.8 551,924 + BPHYT_RS02420 0.56 +0.6 551,925 - BPHYT_RS02420 0.56 -0.4 551,925 - BPHYT_RS02420 0.56 -0.1 552,257 + +2.9 552,266 + +0.4 552,266 + +0.1 552,313 - -2.1
Or see this region's nucleotide sequence