Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10955

Experiment: 24hr PHYTO6 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10950 and BPHYT_RS10955 are separated by 31 nucleotidesBPHYT_RS10955 and BPHYT_RS10960 are separated by 592 nucleotidesBPHYT_RS10960 and BPHYT_RS10965 are separated by 53 nucleotides BPHYT_RS10950: BPHYT_RS10950 - transcriptional regulator, at 2,491,739 to 2,492,611 _RS10950 BPHYT_RS10955: BPHYT_RS10955 - dioxygenase, at 2,492,643 to 2,493,575 _RS10955 BPHYT_RS10960: BPHYT_RS10960 - hypothetical protein, at 2,494,168 to 2,494,281 _RS10960 BPHYT_RS10965: BPHYT_RS10965 - hypothetical protein, at 2,494,335 to 2,494,724 _RS10965 Position (kb) 2492 2493 2494Strain fitness (log2 ratio) -1 0 1at 2491.683 kb on + strandat 2492.150 kb on + strand, within BPHYT_RS10950at 2492.151 kb on - strand, within BPHYT_RS10950at 2492.221 kb on + strand, within BPHYT_RS10950at 2492.222 kb on - strand, within BPHYT_RS10950at 2492.628 kb on + strandat 2492.883 kb on + strand, within BPHYT_RS10955at 2493.311 kb on - strand, within BPHYT_RS10955at 2493.579 kb on - strandat 2493.579 kb on - strandat 2494.121 kb on - strandat 2494.133 kb on + strandat 2494.317 kb on - strandat 2494.557 kb on + strand, within BPHYT_RS10965

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO6 MOI 0.1
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2,491,683 + -0.2
2,492,150 + BPHYT_RS10950 0.47 -0.4
2,492,151 - BPHYT_RS10950 0.47 +1.7
2,492,221 + BPHYT_RS10950 0.55 -0.2
2,492,222 - BPHYT_RS10950 0.55 -1.4
2,492,628 + +0.2
2,492,883 + BPHYT_RS10955 0.26 -1.1
2,493,311 - BPHYT_RS10955 0.72 -0.1
2,493,579 - +1.1
2,493,579 - +0.5
2,494,121 - +0.1
2,494,133 + +0.6
2,494,317 - -0.5
2,494,557 + BPHYT_RS10965 0.57 +0.6

Or see this region's nucleotide sequence